RNA id: XM_043262084.1


Basic Information

Item Value
RNA id XM_043262084.1
length 1424
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC122361118
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21167981 ~ 21169404 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGTACGTGCCGGATTCTGCGTCATCCATTGTTTACAAATCAACCCTTGAGCTGTTTCTGTTGGGCAGCGTGGCGGACGCCGGCTAAACGGTCCCatctatttgaataaaaacaaacttcaaGACTGGATATTTGTTATCTGGAGCTATATTGAAAATGCCCTGTCGAAAGGAGAACTATATCTTTTTGGAACAGTCGGTGACGGTGGATTCTAAGGAAGTGGACGCGCTCGTGTCGAAAATCGGCGAGGCGCTGCAGCTTCACAACAATAGCTCGAGCCAGAAGGCGATGTCACGTCTGCACGGTCTCGCGAACGGCAGACCTAACGTTAACGGCAACAACAGCAGCGGCAGCGGCGCGGCGGGCGCTCAGCGGTGCATCCGTCTCCGCAGCCGGAGTTTACGCACCAGCCGGGCCAGTCCGTACAACCCGCCCGGATCCAGCGATCAGGAATGGGACCATTTCAGATCCTCTTGGAACCGAAAGAAAATCGACGAGGACGATCCGCACCAGCTCCTCCAGGAACTCATTTTGTCGGGGAACCTGATCAAGGAGGCGGTCAGACGGCTTCAGTTTTCCTCGGAACCAACGGAGCACGACATCTCCAAATCTGTAGACTGACTCGGCGAGCCCGCGGATGCATGAACGTCCCGACGTTTTCCGAGCTCATTGTCATACGTCGGTTTTACTAACTTTGATATCacaacctttttcttttttttttcctattgtATATCGCCGAGATGGAAACGTTCTGTATTTGGACTCTTTTGCGACGTGACCCTACCTTATTCGCCCGTTTTTAAATCTCAGTGTTTGGattgaaatgcaaatgtgatGCGAAAATCTAGTGGTCTATAgcgatgcattttattatagcaTTAACCGGCCCCTGGTTGGTTTGTCCTAGAATGGTGCATCGTGTTTTGGTTTGCTGGAGTTCAGCACTGTGTGTCAGTAGCAAACAACTGCTCAACTGCTTTGTTTACAATGTAGATGCGCTCGGGCTGCTGGTCTGCAGTCCTCCTTTAGATCAGGCAACGGGTCACACTTTTTGTTTACTCGTTTTGAAACTATGTTTGGATACCGATACATTGCTATTTTGATTTCAGACCGGCCCCGTGTGCGGGGTCCTTGTTCTCCGTTTCTTTGATTTCCACGTGAGGAGCAGGCCAACACTCCTTCTCAAAGAGAAAACGAGATCAAACTCACACGCGTGTGGGTAAATGTGTTATACACCGGGGGATGTGATCACAACACGATGACACTGTGGTGCTTTTTGATTCCAGTGTGGAGttctcatttaatttgttttgttttcactcTGTGTAAACTCTGCGTATGCTTCGCAacgaagtgtttttaaaaactctgattGTCCAGAGAGTTTGGTGTCTAATAAACATGGTGTTTTTTTGCATAA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169793 lncRNA downstream 47397 21118149 ~ 21120584 (-) True G114997
TU169792 lncRNA downstream 47441 21118149 ~ 21120540 (-) False G114997
TU169735 lncRNA downstream 332746 20781803 ~ 20835235 (-) True G114947
TU169727 lncRNA downstream 398894 20768744 ~ 20769087 (-) True G114943
TU169699 lncRNA downstream 442310 20724171 ~ 20725671 (-) True G114924
TU169853 lncRNA upstream 114060 21283464 ~ 21314746 (-) True G115042
TU169865 lncRNA upstream 161608 21331012 ~ 21331358 (-) True G115051
TU169954 lncRNA upstream 219411 21388815 ~ 21389147 (-) True G115098
TU169974 lncRNA upstream 436576 21605980 ~ 21614179 (-) False cenpw
TU170024 lncRNA upstream 655794 21825198 ~ 21825437 (-) True G115155
XM_043261888.1 mRNA downstream 21904 21139170 ~ 21146077 (-) False dek
XM_043261890.1 mRNA downstream 21938 21139170 ~ 21146043 (-) False dek
XM_043261887.1 mRNA downstream 21938 21139170 ~ 21146043 (-) False dek
XM_043261889.1 mRNA downstream 21964 21139170 ~ 21146017 (-) True dek
XM_043261386.1 mRNA downstream 29500 21120769 ~ 21138481 (-) True LOC122360614
XM_043260273.1 mRNA upstream 146375 21315779 ~ 21321087 (-) False ccne2
XM_043260272.1 mRNA upstream 146375 21315779 ~ 21321087 (-) True ccne2
XM_043260869.1 mRNA upstream 153507 21322911 ~ 21329991 (-) True tp53inp1
XM_043260618.1 mRNA upstream 164246 21333650 ~ 21346600 (-) True nagpa
XM_043261010.1 mRNA upstream 191389 21360793 ~ 21365201 (-) True LOC122360424
TU169801 other downstream 150876 21012607 ~ 21017105 (-) True G115003
TU169673 other downstream 514407 20651977 ~ 20653574 (-) True G114901
TU169487 other downstream 715531 20441965 ~ 20452450 (-) False G114793
TU169489 other downstream 715531 20441965 ~ 20452450 (-) True G114793
TU169372 other downstream 1000367 20166795 ~ 20167614 (-) False G114715
TU169949 other upstream 206486 21375890 ~ 21378836 (-) True G115093
unassigned_transcript_2161 other upstream 239540 21408944 ~ 21409025 (-) True trnas-aga_117
unassigned_transcript_2162 other upstream 240556 21409960 ~ 21410031 (-) True trnae-cuc_38
XR_006252759.1 other upstream 240887 21410291 ~ 21411772 (-) False mettl6
TU169979 other upstream 390817 21560221 ~ 21561060 (-) True G115116

Expression Profile