RNA id: unassigned_transcript_2160


Basic Information

Item Value
RNA id unassigned_transcript_2160
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_37
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21138881 ~ 21138952 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGcggcccgggttcgattcccggtcaGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252821.1 lncRNA upstream 6776 21129128 ~ 21132105 (+) False LOC122360615
TU169784 lncRNA upstream 6779 21129277 ~ 21132102 (+) True LOC122360615
TU169773 lncRNA upstream 18349 21118149 ~ 21120532 (+) True G114978
XR_006252804.1 lncRNA upstream 209440 20928702 ~ 20929441 (+) True LOC122360417
TU169573 lncRNA upstream 370961 20767278 ~ 20767920 (+) False siglec15l
TU169778 lncRNA downstream 2090 21141042 ~ 21142030 (+) True G114983
TU169826 lncRNA downstream 29042 21167994 ~ 21169353 (+) True G115020
TU169926 lncRNA downstream 251829 21390781 ~ 21391162 (+) True G115074
TU170003 lncRNA downstream 554542 21693494 ~ 21694544 (+) True G115134
TU170026 lncRNA downstream 689264 21828216 ~ 21829531 (+) True G115157
XM_043261058.1 mRNA upstream 21191 21107087 ~ 21117690 (+) True ptpn23a
XM_043261059.1 mRNA upstream 21191 21109875 ~ 21117690 (+) False ptpn23a
XM_043261440.1 mRNA upstream 354440 20778080 ~ 20784441 (+) True cmtm6
XM_043260061.1 mRNA upstream 364503 20770464 ~ 20774378 (+) True cmtm7
XM_043260060.1 mRNA upstream 368489 20767348 ~ 20770392 (+) True siglec15l
XM_043260165.1 mRNA downstream 8805 21147757 ~ 21157049 (+) True kcnv1
XM_043262099.1 mRNA downstream 71900 21210852 ~ 21314454 (+) True si:dkey-22o22.2
XM_043260619.1 mRNA downstream 207705 21346657 ~ 21354616 (+) True ndufaf6
XM_043261013.1 mRNA downstream 226387 21365339 ~ 21378842 (+) True plekhf2
XM_043261817.1 mRNA downstream 253890 21392842 ~ 21405824 (+) False LOC122360960
XR_006252832.1 other upstream 911804 20219644 ~ 20227077 (+) False hjv
TU169046 other upstream 1491075 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 1810118 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 1885835 19197804 ~ 19253046 (+) True G114352
TU168594 other upstream 2298653 18827254 ~ 18840228 (+) False LOC122360132
XR_006252812.1 other downstream 711037 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 744977 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 838165 21977117 ~ 21979368 (+) True G115193
TU170321 other downstream 1770609 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 1825617 22964569 ~ 22970526 (+) False LOC122360067