RNA id: TU187875


Basic Information

Item Value
RNA id TU187875
length 1318
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G127233
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17794861 ~ 17933819 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACCAACATCATAATTACGATAGTTATTCACAGCGAACTAATAAATGAACATTCGGATGAAATACTTAAATAAAGAAtgcaaatatgattttataAAACGtttaaataactgaatttaatttaaaactaagcaataaaatattaaatataaatataattacagctGTTTAAAGgcgaatgaataaacaaattagtaaatgtatttaaaaaatggtatttagagtgtatatagtatagtatggagtgtttatagtattaatatattttagggtgtaaaaataaataagtaaaccACATAGATGCTGTTAAGTATTAGAAAGAGTGTGCCTTgcacaatgataaaaaaaataaaataaataaagacgtAACTAAAACAAAGGACAGAGATCATCGGTGTATGCTAAATTACTATTTCAgtctatttcaaaatgtttttttttattttaatttcagtttttcagtctTAAATATATCAGACAAGTAAAAAATACCCCCTCAAATAGTAGATTTCTACTATTAGAAATACAGTGCCAGTTGTGACTTTTACTAGCAAAAAAACAGTCTGACCAGCACATCCCTAAGACCCCTGATCCGACGacaggagaaaagaaaaaccatTTGCTGCTTTGATTTCACGAACCAGATCGGATCCACCGATGCCGACATTAACCACATCCGTGATGGGTTTCCCCGTGTATCCCTTCCACTCTCCGCTGCGGACTTTCTGTggagggcacacacacacacacacacacacacacacacactaagtcagtttaaaactgaactggaagctaagtgctgggcgtctggtcagaggagaactggccccgactgagtctggtttctcccaagggttttttttctccattctgtatggatggggtttgggttcctctggcttgctttgtcggggacacttaacttctagcgattatcatcgaattagaccgtctctgcatttaataacaaattgttcactctggtcattatacatcccttgtATTCTTcaactttatactgtacagtgctttgatgcgacctgtgttgttaaaagcgctatataaataaaaatgattgattgattgattgatagagaTGCAGTTTCCGTATCTGATCAGCGTTTATTTTCAAACACGTCACCCACGTGACAGAAGCCCTTCATCTTCTCCAGGACCCGGTTGACCTCCGGCATCACGTCTTTGCCGTCGACGTTTATGGGAGCGTTCGAGCGGTTCCTCAGAGCCACGTGGAGAACGGCACGGCCCTGcagaacacagaacacacttttgaacacacacacacacacacacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187898 lncRNA upstream 71319 17857012 ~ 17858149 (+) True G127243
TU187896 lncRNA upstream 73657 17854650 ~ 17855811 (+) True G127242
TU187894 lncRNA upstream 77755 17818738 ~ 17851713 (+) True G127240
TU187887 lncRNA upstream 115046 17808601 ~ 17814422 (+) False G127239
TU187883 lncRNA upstream 115046 17808674 ~ 17814422 (+) False G127239
TU187928 lncRNA downstream 38731 17972550 ~ 17974502 (+) True G127263
TU187939 lncRNA downstream 43856 17977675 ~ 17981341 (+) True G127268
TU188151 lncRNA downstream 417921 18351740 ~ 18352103 (+) True G127413
TU188170 lncRNA downstream 552038 18485857 ~ 18487271 (+) True G127431
TU188173 lncRNA downstream 558178 18491997 ~ 18518461 (+) True G127434
XM_043216610.1 mRNA upstream 12200 17887967 ~ 17917268 (+) True LOC122323000
XM_043264449.1 mRNA upstream 42261 17883618 ~ 17887207 (+) False sdr42e1
XM_043264448.1 mRNA upstream 42261 17883665 ~ 17887207 (+) False sdr42e1
XM_043264450.1 mRNA upstream 42261 17884361 ~ 17887207 (+) False sdr42e1
XM_043216687.1 mRNA upstream 152491 17769771 ~ 17776977 (+) False pigb
XM_043264339.1 mRNA downstream 3211 17937030 ~ 17969461 (+) False LOC122362789
XM_043264342.1 mRNA downstream 3265 17937084 ~ 17969461 (+) False LOC122362789
XM_043264340.1 mRNA downstream 9233 17943052 ~ 17969461 (+) False LOC122362789
XM_043264341.1 mRNA downstream 11489 17945308 ~ 17969461 (+) True LOC122362789
XM_043264208.1 mRNA downstream 49659 17983478 ~ 18070581 (+) True LOC122362666
TU187918 other upstream 1303 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 1303 17926100 ~ 17928165 (+) False G127258
XR_006253166.1 other upstream 42257 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 117301 17808674 ~ 17812167 (+) False G127239
TU187698 other upstream 517875 17410866 ~ 17411593 (+) True G127098
TU187968 other downstream 204716 18138535 ~ 18140253 (+) True G127292
TU188207 other downstream 626547 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 626547 18560366 ~ 18561610 (+) False G127456
TU188266 other downstream 843949 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 843949 18777768 ~ 18782159 (+) True G127500

Expression Profile