RNA id: TU187894


Basic Information

Item Value
RNA id TU187894
length 1243
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G127240
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17818738 ~ 17851713 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttattttttttttTGGGAAGTCATTttcgttttattaattttccaaaaatatgcAGCCATAAAGATCGGCATGACAAAAATCAgcacaatttacaataaaacgAAAGACACTTTTGCTCATAAATCTCTGATAGAAAATCCTTTCCGAAACTCACTCTTGTCAGTGCCAAACACATCTGTAGAAATGCAGAGGACGTTTATATAATAGTGTCTAATTAAACAACAGTATCGAcgataaaagtgtttttcattaaaagttgCTCGTCAGCGCACAGAATCGAATAGTTTCATAGTACAAATGAAGGCAAAGTTATTTAACAGTCTGATACGTTTCCTGCGAGACAAAATGTGCTTACTTTAAGCAATATTTAAGCTGTAAACATTTAGTAAATGATATAAAGCGATGATTTGTCACAATACAGCTTGACTGAGGTGATCTATACATAGTAAGACTTGaaccttttgtttttagaaaagtgctttaacctttaaaagcagtacaaaaaaaaaaatattttaataatatggtTTTCAAAAGCGGGCtatctgtaaacaaaaaaacaaaaacaaaaatgtaaacaaagtcAAAGTGAGAAAAAGTAATGATTAAGAGCAATAGGGCATTTGATCTGTACAAACAAGGAGGCctgaatacatttgaatttgtaaaaattcaaaatcaaaacaaaatataatttgtacaGGCTGCCAAAAATAGAATGGTCTCACATTGTGCATGTTGGGAAATCTCATCAGCCAAATAGTGCACATCCGTAACGCGTGACTTTGAAAGCTCATATTAGAAATACAAGATTTCTCAATTATGCTCGAATGCATAGATATGATCAAAATCTAGAGATGTTTCGAAATCTTGTACGTAGAGACATACAGCTGTACGCAGGAGTACATTACAAACGTTATTCTGTAAACATCAGATACAGATTTGTGATTTAATAACGGCGTCCGGTCGCCCTCGTCTGCCGTAGGGCCGCTCTCACGCGCGTCCCGGCGGTCCTGATGCTGTCGCCATGGTTACACCGTTGCCCTGGCAGCCGGAGTCTAATCCACCCCATCAAAGCCCTGAGCGTTTTCAATGGCCATGTGCAGCTTCTCGCGGAGCTCCTCGAACGACTCGTACGGAGGGAGATCCAGCCGGTTGAAGCTGAGGGAGAGACGCAGGACGGGTCATGAACGAggccgacacacacacacacacacacacacacacacacacacactctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187887 lncRNA upstream 4316 17808601 ~ 17814422 (+) False G127239
TU187883 lncRNA upstream 4316 17808674 ~ 17814422 (+) False G127239
TU187890 lncRNA upstream 4316 17808674 ~ 17814422 (+) True G127239
TU187884 lncRNA upstream 4316 17809088 ~ 17814422 (+) False G127239
TU187882 lncRNA upstream 6571 17808674 ~ 17812167 (+) False G127239
TU187896 lncRNA downstream 2937 17854650 ~ 17855811 (+) True G127242
TU187898 lncRNA downstream 5299 17857012 ~ 17858149 (+) True G127243
TU187874 lncRNA downstream 77755 17929468 ~ 17933819 (+) True G127233
TU187875 lncRNA downstream 77755 17929468 ~ 17933819 (+) False G127233
TU187928 lncRNA downstream 120837 17972550 ~ 17974502 (+) True G127263
XM_043216686.1 mRNA upstream 41761 17769658 ~ 17776977 (+) True pigb
XM_043216687.1 mRNA upstream 41761 17769771 ~ 17776977 (+) False pigb
XM_043264911.1 mRNA upstream 125504 17555210 ~ 17693234 (+) True LOC122363047
XM_043264912.1 mRNA upstream 125504 17555211 ~ 17693234 (+) False LOC122363047
XM_043264179.1 mRNA upstream 318221 17498529 ~ 17500517 (+) True LOC122362636
XM_043264449.1 mRNA downstream 31905 17883618 ~ 17887207 (+) False sdr42e1
XM_043264448.1 mRNA downstream 31952 17883665 ~ 17887207 (+) False sdr42e1
XM_043264450.1 mRNA downstream 32648 17884361 ~ 17887207 (+) False sdr42e1
XM_043216610.1 mRNA downstream 36254 17887967 ~ 17917268 (+) True LOC122323000
XM_043264339.1 mRNA downstream 85317 17937030 ~ 17969461 (+) False LOC122362789
TU187881 other upstream 6571 17808674 ~ 17812167 (+) False G127239
TU187698 other upstream 407145 17410866 ~ 17411593 (+) True G127098
TU187390 other upstream 509580 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 512764 17303820 ~ 17305974 (+) False LOC122322904
TU187377 other upstream 653981 17129922 ~ 17164757 (+) False LOC122362575
XR_006253166.1 other downstream 31952 17883665 ~ 17887211 (+) True sdr42e1
TU187918 other downstream 71215 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 74387 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 286822 18138535 ~ 18140253 (+) True G127292
TU188207 other downstream 708653 18560366 ~ 18561610 (+) False G127456

Expression Profile