RNA id: TU187896


Basic Information

Item Value
RNA id TU187896
length 1136
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G127242
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17854650 ~ 17855811 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTGTTGTCGTCGTTGACCACAATATCAGCCCCTCCTGGTTTCAGCTCATGCTGGTGCGTCTGTGGAAGCCATCGGGTCAATATCACAGAAAAATACACAGAGCATACATCTTCAGGAAGTCTAGAGGACTTGATCTAAAGCTGATTTTCATTCGATTCTGTTCTTGTACCAGTCTGTTCCCTGCACAAAGCGTCTTGAAAATGTAAAGCGGAACAGGTCACCTGTCCAAAGAGCTCCTCGTCGATGGTGAACCTGAGGTCTAGATCTGTGGGGTCGTTCTCCAAAATCCATCGCAGGGAGTTGAAGTACTCGCTGTCCTGAAACAATGCAGCCAAAAACAACAGGCTGACGGGTGTTTGATACCTAATGACGACTAAACTAAAGCTCCACGGGACATTAAGCGCACCGTTAGTGTAACTAAATATAACTTGCACTTCTTAATTATTACCCAGAAGAcgttttttataatgaaatgctacgatatatacacatactatATAAAAGTGGTTTCCTAGCAGCTTTAATATgactaaaaagtattttttttaaaatgtaaatatagaaacaagatatttatatataaacaaaattaatgtatatgaaatatgtatatatacacatgcatacataattgtattcatatatgtcacttttgattaatttaatgccatcttactgaataaaagtaatcatttctgtattttactcACTCGCCAAAGACTTCACTGCTctgacacacacacacacacacacacgaatcaGAGCAGTGAAATCTGTGTGCGCgcaataaatgaaatttaaataaatatgagtgACTCTGCACTTCTACAACCTACTGAACATTTATAAAAgggcaaaatataattttctttcattacaatttaatgaaGTGAGTGTAGTTATTTATCATAACATAAACAGGGTATTTCATATTGAGTTCGATTTGATGATTTTGAGCCATTTGATGGTCACTGCACTGTGAAATACAGTATCTCACAGtcatatatatttgataaacgCACCACATCATGCAGGTGTTGCATGCAAAAGTGTttgtaatatacatattatatacattacaatatagtacatttctctctctctgagaaagACGTTTAGAGCTGATGCTGATT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187894 lncRNA upstream 2937 17818738 ~ 17851713 (+) True G127240
TU187887 lncRNA upstream 40228 17808601 ~ 17814422 (+) False G127239
TU187883 lncRNA upstream 40228 17808674 ~ 17814422 (+) False G127239
TU187890 lncRNA upstream 40228 17808674 ~ 17814422 (+) True G127239
TU187884 lncRNA upstream 40228 17809088 ~ 17814422 (+) False G127239
TU187898 lncRNA downstream 1201 17857012 ~ 17858149 (+) True G127243
TU187874 lncRNA downstream 73657 17929468 ~ 17933819 (+) True G127233
TU187875 lncRNA downstream 73657 17929468 ~ 17933819 (+) False G127233
TU187928 lncRNA downstream 116739 17972550 ~ 17974502 (+) True G127263
TU187939 lncRNA downstream 121864 17977675 ~ 17981341 (+) True G127268
XM_043216686.1 mRNA upstream 77673 17769658 ~ 17776977 (+) True pigb
XM_043216687.1 mRNA upstream 77673 17769771 ~ 17776977 (+) False pigb
XM_043264911.1 mRNA upstream 161416 17555210 ~ 17693234 (+) True LOC122363047
XM_043264912.1 mRNA upstream 161416 17555211 ~ 17693234 (+) False LOC122363047
XM_043264179.1 mRNA upstream 354133 17498529 ~ 17500517 (+) True LOC122362636
XM_043264449.1 mRNA downstream 27807 17883618 ~ 17887207 (+) False sdr42e1
XM_043264448.1 mRNA downstream 27854 17883665 ~ 17887207 (+) False sdr42e1
XM_043264450.1 mRNA downstream 28550 17884361 ~ 17887207 (+) False sdr42e1
XM_043216610.1 mRNA downstream 32156 17887967 ~ 17917268 (+) True LOC122323000
XM_043264339.1 mRNA downstream 81219 17937030 ~ 17969461 (+) False LOC122362789
TU187881 other upstream 42483 17808674 ~ 17812167 (+) False G127239
TU187698 other upstream 443057 17410866 ~ 17411593 (+) True G127098
TU187390 other upstream 545492 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 548676 17303820 ~ 17305974 (+) False LOC122322904
TU187380 other upstream 689893 17129922 ~ 17164757 (+) False LOC122362575
XR_006253166.1 other downstream 27854 17883665 ~ 17887211 (+) True sdr42e1
TU187918 other downstream 67117 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 70289 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 282724 18138535 ~ 18140253 (+) True G127292
TU188207 other downstream 704555 18560366 ~ 18561610 (+) False G127456

Expression Profile