RNA id: TU188173


Basic Information

Item Value
RNA id TU188173
length 999
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G127434
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18491997 ~ 18518461 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGTCTCCTCCTCCGGTGAGTATGGATCGGATGAAGCCTTCTTTCCTCCTCTTGTCCTCAGGGTTGGGCGGCAGAGGTTTGGAGCCGTGATTCAGTGGGCCAGAGTCTTTACCGGACGAGCCAATCATGGTGCTGGTGTTTCTCATGGGCGGAGCTGGCGGCTTGTCTTCTACTTCCCCATTGTCTGACATCTTCAGCTGTGGGTGTGGCTAAATCTTTGTGTTGGAGGCACATGTAACTCAAGCACACATCAGACGCTGTTATTTGATCTCAAAGCACATAAACGCCGAGAAGAATCACTATAATCAGAGCGAATCCCGCTGATAAAGCCACATCCACATCCGAGCGCTGTCTTTGATGAATAAGCAGCTCTTCTTCCTCTGTCTGCTCTCCACAGACACGCGCCCCACGCCAGCCAGTGCGTCTCCGCGTCACGCGAGATCCCGCTGAACGCGAACGCGAACGCGAGTGCGGCGCGGCGCGGCGCGTCACGGCGGTGAAGAGCAGGCGGCGCGCACTCACCTCTGTCCAAAGACGCGAATGTGATTTCCCCGAGCGGACTCTCCCTCTCTCCGACGCGCGTTCAGCGGCTCTCCGCGCTCATGAGCTCCGGCGTTCTCCGCTCCGTCGGTCTGTCGCGCCGCTGCTGCTGTAGAGACGCACACAAACCTGCTGCGTGAAGCGCCGCCCACGCGCGATCCCACTGGACGCGGTTCCCCACGCAGCGCTGCGCTCACGAGACGCGTCACCTGCGCCAGTGGAGGAGGAACATGCAATATTAAAGACACCACATGCCTGATCTCTCACCAGACCACTCTACATATCTGCCTCAGAAATAACAGGGACGCGGCCTAgacgcacacagacagacagacagacagacagacagacagatagatagatagatagatagatagatagatagatagatagatagatagcagaCAATCAGACAGATAGGTATATagcagataaacagacagacagacagatagata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188170 lncRNA upstream 4726 18485857 ~ 18487271 (+) True G127431
TU188151 lncRNA upstream 139894 18351740 ~ 18352103 (+) True G127413
TU187939 lncRNA upstream 510656 17977675 ~ 17981341 (+) True G127268
TU187928 lncRNA upstream 517495 17972550 ~ 17974502 (+) True G127263
TU187874 lncRNA upstream 558178 17929468 ~ 17933819 (+) True G127233
TU188185 lncRNA downstream 8668 18527129 ~ 18528132 (+) True G127443
TU188186 lncRNA downstream 8668 18527129 ~ 18528342 (+) False G127443
TU188209 lncRNA downstream 41502 18559963 ~ 18563152 (+) True G127456
TU188216 lncRNA downstream 55358 18573819 ~ 18574354 (+) True G127460
TU188242 lncRNA downstream 128095 18646556 ~ 18646836 (+) False LOC122323076
XM_043264031.1 mRNA upstream 31188 18393603 ~ 18460809 (+) True hcn4
XM_043264106.1 mRNA upstream 105067 18339199 ~ 18386930 (+) True LOC122362573
XM_043264108.1 mRNA upstream 105067 18339200 ~ 18386930 (+) False LOC122362573
XM_043264105.1 mRNA upstream 105067 18348667 ~ 18386930 (+) False LOC122362573
XM_043264104.1 mRNA upstream 148140 18339143 ~ 18343857 (+) True ugt5f1
XM_043216920.1 mRNA downstream 1530 18519991 ~ 18523564 (+) True aqp11
XM_043264715.1 mRNA downstream 25902 18544363 ~ 18546307 (+) True aamdc
XM_043216726.1 mRNA downstream 127901 18646362 ~ 18652164 (+) True LOC122323076
XM_043216727.1 mRNA downstream 130111 18648572 ~ 18652164 (+) False LOC122323076
XM_043216730.1 mRNA downstream 136157 18654618 ~ 18658740 (+) False LOC122323077
TU187968 other upstream 351744 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 563832 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 563832 17926100 ~ 17928165 (+) False G127258
XR_006253166.1 other upstream 604786 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 679830 17808674 ~ 17812167 (+) False G127239
TU188207 other downstream 41905 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 41905 18560366 ~ 18561610 (+) False G127456
TU188266 other downstream 259307 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 259307 18777768 ~ 18782159 (+) True G127500
XR_006246956.1 other downstream 1484543 20003004 ~ 20013786 (+) False wdr59

Expression Profile