RNA id: TU188180


Basic Information

Item Value
RNA id TU188180
length 304
lncRNA type read_through
GC content 0.44
exon number 2
gene id G127439
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18502441 ~ 18546723 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attttttttttttttttttttttttacaaaaaaaacatttatttcacataaaacacaattgtGAAAACACTTGATTTTGTGCCGCCTGTTAttgtcacatatatatatacttgggTCAGCGGCGAGCTGGTTTGGGCATGATGAAGACTTTGAGGGTTTGCTGAGATGTATTGTGCCCTCGATGCAGCTCTCGCTGGTGGGCAGGCCGTCCAGACTCTCGTTCCACGCAGGTTTAGAGGCAGATTGTTTACTGCTGCTGGAGCTGTAGGCCAGGAGCAGCCGCACCTCAATCTGACAGGCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188170 lncRNA upstream 15170 18485857 ~ 18487271 (+) True G127431
TU188151 lncRNA upstream 150338 18351740 ~ 18352103 (+) True G127413
TU187939 lncRNA upstream 521100 17977675 ~ 17981341 (+) True G127268
TU187928 lncRNA upstream 527939 17972550 ~ 17974502 (+) True G127263
TU187875 lncRNA upstream 568622 17929468 ~ 17933819 (+) False G127233
TU188209 lncRNA downstream 13240 18559963 ~ 18563152 (+) True G127456
TU188216 lncRNA downstream 27096 18573819 ~ 18574354 (+) True G127460
TU188242 lncRNA downstream 99833 18646556 ~ 18646836 (+) False LOC122323076
TU188255 lncRNA downstream 143842 18690565 ~ 18693231 (+) True G127492
TU188269 lncRNA downstream 183967 18730690 ~ 18781704 (+) False G127500
XM_043264031.1 mRNA upstream 41632 18393603 ~ 18460809 (+) True hcn4
XM_043264106.1 mRNA upstream 115511 18339199 ~ 18386930 (+) True LOC122362573
XM_043264108.1 mRNA upstream 115511 18339200 ~ 18386930 (+) False LOC122362573
XM_043264105.1 mRNA upstream 115511 18348667 ~ 18386930 (+) False LOC122362573
XM_043264104.1 mRNA upstream 158584 18339143 ~ 18343857 (+) True ugt5f1
XM_043216726.1 mRNA downstream 99639 18646362 ~ 18652164 (+) True LOC122323076
XM_043216727.1 mRNA downstream 101849 18648572 ~ 18652164 (+) False LOC122323076
XM_043216730.1 mRNA downstream 107895 18654618 ~ 18658740 (+) False LOC122323077
XM_043216729.1 mRNA downstream 107896 18654619 ~ 18658740 (+) True LOC122323077
XM_043216728.1 mRNA downstream 107898 18654621 ~ 18658740 (+) False LOC122323077
TU187968 other upstream 362188 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 574276 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 574276 17926100 ~ 17928165 (+) False G127258
XR_006253166.1 other upstream 615230 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 690274 17808674 ~ 17812167 (+) False G127239
TU188207 other downstream 13643 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 13643 18560366 ~ 18561610 (+) False G127456
TU188266 other downstream 231045 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 231045 18777768 ~ 18782159 (+) True G127500
XR_006246956.1 other downstream 1456281 20003004 ~ 20013786 (+) False wdr59

Expression Profile