RNA id: TU188207


Basic Information

Item Value
RNA id TU188207
length 456
RNA type TUCP
GC content 0.59
exon number 2
gene id G127456
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18559963 ~ 18563152 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTTTGTGGTTTCTGGCTCTCACCCCTTTATGCGGTTGGGACTGGGGTTCCCTGTGGCATGACTGGGACCTCGGGCTTGGCCCCCTTCTGTTCAGACACCGGGGTGGTGGGCAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTGTCGGAGCAGTACGTGGCGGACGGCCGTGTCGACGTAGTAGTTCACGGGGTCTCCGCTGTGGATCATCAGGCCATCCACGAACTTCATGGACTTGGCTCTCTGACCTCTCAGTTTACCAGagacgaccacctcacaacccTTGGCCCCGCTCTCCATGATGAAGCGCAGAACACCATAGCAGGCCCTGAGGACAATAGACACGACGCACAACCGTAAACGCGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188180 lncRNA upstream 13643 18502441 ~ 18546723 (+) True G127439
TU188186 lncRNA upstream 32024 18527129 ~ 18528342 (+) False G127443
TU188185 lncRNA upstream 32234 18527129 ~ 18528132 (+) True G127443
TU188173 lncRNA upstream 41905 18491997 ~ 18518461 (+) True G127434
TU188170 lncRNA upstream 73095 18485857 ~ 18487271 (+) True G127431
TU188216 lncRNA downstream 12209 18573819 ~ 18574354 (+) True G127460
TU188242 lncRNA downstream 84946 18646556 ~ 18646836 (+) False LOC122323076
TU188255 lncRNA downstream 128955 18690565 ~ 18693231 (+) True G127492
TU188269 lncRNA downstream 169080 18730690 ~ 18781704 (+) False G127500
TU188406 lncRNA downstream 708053 19269663 ~ 19288546 (+) False LOC122323181
XM_043264715.1 mRNA upstream 14059 18544363 ~ 18546307 (+) True aamdc
XM_043216920.1 mRNA upstream 36802 18519991 ~ 18523564 (+) True aqp11
XM_043264031.1 mRNA upstream 99557 18393603 ~ 18460809 (+) True hcn4
XM_043264106.1 mRNA upstream 173436 18339199 ~ 18386930 (+) True LOC122362573
XM_043264108.1 mRNA upstream 173436 18339200 ~ 18386930 (+) False LOC122362573
XM_043216726.1 mRNA downstream 84752 18646362 ~ 18652164 (+) True LOC122323076
XM_043216727.1 mRNA downstream 86962 18648572 ~ 18652164 (+) False LOC122323076
XM_043216730.1 mRNA downstream 93008 18654618 ~ 18658740 (+) False LOC122323077
XM_043216729.1 mRNA downstream 93009 18654619 ~ 18658740 (+) True LOC122323077
XM_043216728.1 mRNA downstream 93011 18654621 ~ 18658740 (+) False LOC122323077
TU187968 other upstream 420113 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 632201 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 632201 17926100 ~ 17928165 (+) False G127258
XR_006253166.1 other upstream 673155 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 748199 17808674 ~ 17812167 (+) False G127239
TU188266 other downstream 216158 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 216158 18777768 ~ 18782159 (+) True G127500
XR_006246956.1 other downstream 1441394 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 1525085 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 1986217 20547827 ~ 20549318 (+) False glipr1b

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU268929 False 1480 lncRNA 0.43 4 CI01000054 12039761 ~ 12055511 (-)
striped catfish (Pangasianodon hypophthalmus) TU268929 True 798 lncRNA 0.48 2 NC_047608.1 16437540 ~ 16438387 (-)