RNA id: XM_043216727.1


Basic Information

Item Value
RNA id XM_043216727.1
length 2729
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC122323076
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18646362 ~ 18652164 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gccgtcagaaaaagagtccaagcggctaataaaaacaaaataataacgaGTAATCCAAAAGCAATCCAGTTAAAGTCCATCAACGAACGCCATGTGAGGTTAAAAGCTaacaaagtagttttttttaaagatacaaaCTGCTGCTTccgaagaaaataaaaaaattccttCCTCCGGTAAAAAAGATGCATCATCTGAACTGAAGTATTGAGAAATACTAAGAATTATTCATACGCCATTaacagctgtttggactcttcttctgacggcacccattcaccgcagaacATCCCTTAATAAGCGGGTGAAGTAATGCTGAATTTCTCCAAAAAAGCTCATTtatatcttggatggcctgagggtgagtacaccTTAAGCAcactgtcatttttgggtgaactcttccTTTAAACCCCCCTCCCTGCAGTCACGCTGCGTGAGTCTTCCAGAATGATTGACATATTATTGGCTGACGCTGTGGCCTATGAGAGCATGCCGAGGCATGTAAACACACCCACGGTGGATATATGCAGAATAAACAAGCAGAGGTAAAGCAGGTCTCTGTAGGTATGCAAACTGTAAAGAGGAACAACTGTTGCTTGCATTGCTGAAGGAACCACTAAGAGCATCTGCATCTGGAACAGAATGGCGATATTTAACAACACAACGGCCACAAACATCAGCGGTCCGTATCACTGTAAGATAGATGAACAGTTCAAGTACATTCTCCTCCCGGTGAGCTACACTCTGGTGTTTGTGTTCGGCCTGGCGTTGAACATCACGGCCATGTATTTCATCCTGTTCCGAACCAAACACTGGAAGCCCAGCACCATCTACATGCTCAACCTCAACATCTGCGACACGCTTTACGTCCTCACCCTGCCGTTCCTCATCTACTATTACGCCGATAAGAACGACTGGCCGTTCGGGGAGCTGATGTGTAAGCTGATTCGCTTTCTCTTCTACACAAACCTCTACGGGAGCATCCTCTTCCTCAGCTGCATCAGTCTGCACCGCTTTTTAGGCGTCTGTCACCCGGTGCGCTCCTTGTCCTGGATGAACGGCCGCCGCGCTCGTTTGGTTTCGGTGGGAATATGGATGATCATTCTCATCTTACAAGCACCGATTCTTTATTTCTCCAGGATGAATGATACCGGTGACACGAAATCACAGTCGACGGTTTGCTACGACACCACGAGCAAGGAGCTCTTCGATGACTTTGTTGTTTACAGCTCGGTGGTGATGTTCCTGCTTTTTGTCGTACCGTTCGGGGTGGTGCTGGTCTGCAACGGCTTGATGGTGAAGAAACTTCAGGAACCCGGTATTGGTGGAGGCCCGATGTCGCAGCGCTTTAAGCAGAAGTCGGTGAAGATGATCATCATCGTGCTTCTTGCTTTCATGTTGTGCTTCTTGCCTTTCCACGTGAACCGCAGTATATACTACACCTTCCGTTACCTGGACAAACAAGTGAGCTGCTCGATGCTGGAGGCTGCCAGCATGGCCTACAAGGTCACGCGACCTCTGGCCAGCGCCAACAGCTGCATCGACCCCATCCTCTACTTCATGGCAGGACAGGGTTTCAGAAGCAGCTTCAAGAACAAGAAAAGTAAATCAAGTAAATCTGAAAATAGGAAATCACCCTCAGCTTCTTTATAGCGCACTTGAGGGAAAATGAAGTGCCTCACTCAGGGAAAGACCCATGATGAAATGTCGGAATACTTTAAAAGTAGATCCTACTAAGAAACCTGTCGGCGTTGTATAAATAGAAGGACCTTGTGACCCTTCCAAAGGACATTTTATAGAATGTGAAGGACAGTGTTGCTCTATATATATCTGCTCTCTGACCAGAGAACATGCTGTTTTCTATTCATGCTGCATAAACCTCTGCTTCTGTTTAGCAACCTAGCAAACTGACACTGCGCCTAAGATTCATATAGGTTAATTAAGTGTTTATGAAAAGGTGTGTCGAGACGGTTGGTATCAGCGCAACGACATTTCACTAACTCGCTGGAATTTGGTTCACGTCCAGAATATTGTTCCAGGACACAAAATTAGATAAAGCTGTCTTAACATGCCTTTGATGAGATCAGGTAGTCAAGACAGTTGTTACTGTCAATTAATAGGGGTTATATAATGTGgctaaaaaacattatttgtgcaTTTGGTTTAACGCGGTGtaaggttaaaaaacacattattttccacataccgTGAATCGTTACTGTTtgtcctctaagccccgccttcgtAAAAACAGGtggatttgtacaaagctcattgttattaaaaaaaagcgaggtgtgctctgattgacCAGCTATCCAGCGCGTtcgttgtgattggccgaatatcTCAAATGTTATGTCCCGGCGTAATAacgttaaaacaataaatgccaTTACAAACGAGTAATTTGTGGCATAATTACTGATTAAGTTTGCGTAAACATAATTACAACAAATTCGTGATCGGATAAACGACAAACAAAAAGCTCTACTCTCTCAATGCTCAAAACTcacgtttgaatagtaagtcttaacttttataaagaaactttagtctttgcagcTTTAGGGATCTTATATATGCACTAACACTCCAAAGAGGAGTGAcgcatttaaaactaaaactgaaagcgaaaatatgaaatgaagtaaaataaaaactgaaataaaatttaaagtttaaaatttaaattaaaatttaagtattgaaataataataaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188242 lncRNA upstream 1736 18646556 ~ 18646836 (+) False LOC122323076
TU188216 lncRNA upstream 74218 18573819 ~ 18574354 (+) True G127460
TU188209 lncRNA upstream 85420 18559963 ~ 18563152 (+) True G127456
TU188180 lncRNA upstream 101849 18502441 ~ 18546723 (+) True G127439
TU188255 lncRNA downstream 38401 18690565 ~ 18693231 (+) True G127492
TU188269 lncRNA downstream 78526 18730690 ~ 18781704 (+) False G127500
TU188406 lncRNA downstream 617499 19269663 ~ 19288546 (+) False LOC122323181
XR_006253152.1 lncRNA downstream 678158 19330322 ~ 19348479 (+) True LOC122362700
XR_006246957.1 lncRNA downstream 800366 19452530 ~ 19480221 (+) True LOC122323165
XM_043264715.1 mRNA upstream 102265 18544363 ~ 18546307 (+) True aamdc
XM_043216920.1 mRNA upstream 125008 18519991 ~ 18523564 (+) True aqp11
XM_043264031.1 mRNA upstream 187763 18393603 ~ 18460809 (+) True hcn4
XM_043264108.1 mRNA upstream 261642 18339200 ~ 18386930 (+) False LOC122362573
XM_043216730.1 mRNA downstream 2454 18654618 ~ 18658740 (+) False LOC122323077
XM_043216729.1 mRNA downstream 2455 18654619 ~ 18658740 (+) True LOC122323077
XM_043216728.1 mRNA downstream 2457 18654621 ~ 18658740 (+) False LOC122323077
XM_043216868.1 mRNA downstream 617447 19269611 ~ 19288556 (+) True LOC122323181
XM_043216867.1 mRNA downstream 623186 19275350 ~ 19288556 (+) False LOC122323181
TU188207 other upstream 86962 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 86962 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 508319 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 720407 17922928 ~ 17928165 (+) True G127258
TU188266 other downstream 125604 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 125604 18777768 ~ 18782159 (+) True G127500
XR_006246956.1 other downstream 1350840 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 1434531 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 1895663 20547827 ~ 20549318 (+) False glipr1b

Expression Profile