RNA id: TU188255


Basic Information

Item Value
RNA id TU188255
length 2426
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G127492
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18690565 ~ 18693231 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTGGCATCAGTGAATGTTTAATAACAAAGAAACCCACAGTGACAAAATATGACAACGGTGTGAAATAAGCACGACGACTTACAGGATCCGAGCggcctctcttctcttcttttaaAATACTGGAACAGTTTTAACTTAAACGAGACGGCACATGccaaatgaggaaaaaaaacagacaaaatactTATAAAAATATGCCATTAGATTCATATGAACAATCGTGGACTGTGAGAGCACTATGTACAGAGAAAGGCAATATATaccaatatttacaataaacattGATGACGTCTTTCACTAGAAAGGGCTGAGAGGGTCACTTACAACAGTAAGACTCGACTTAGGACTATCATCACGGATCGATTTAAATatctgattaaaaatgcagaCTCTTGTTTATGAAAATATGACACGCCGAGGATCCCGTCTGCAGTGAGAAGTTATCTTCCGCAACGCTTCGACGTTTCTACCTACGAGTTCTTGGCACTAGCGTCCTACTGCTCAACAGGTCAATTGAAGCATTCCCGGGAATTTCCAAGCGCCTGGGAAACGTCTGACTTCACATCCTTCAGGCGAGCGAGAATTCGGGGCGTgacgcatttttttttcccagacaaACTAAGGCAGCTGCAATTGCTCGTTTAACAGGAAGCGCAGGCGGAGCTCTTCAGGGTTAATTGTCTGTTATAACGGCCGAAGGGCTGCGACCCGTCTGACTTCATTCTAAGCGGCGTAATCtacacactcacaaacaaacacagggTTCATCTCTCCTGTGAACTCTGGATGTCTAATCGGTGAAGAAACAACGCCGTTCCCTTTCCTGAATGATCACGGTCAAAGAAAAGACGCAGCTGTCCGTCGGTGAATCTCTCTAATCCCGACTAGTTATATTACATCACGTGATGAGTTTTTGAttgaataatgacttttttatatatatataaaaggtgaTTGGACACAATTCTGGCTTCAAATtaatatcttgcaattctggcTTTTCAGAACTGCTTAAAGTAAGATTATATTACGGAGTCATAaaatcagaattgtgagaaaactggcaattataagaaaatttgttcttttttccccctcagacTTGAACGTCAGCTTTATATGCTTTAATTGAGAGAAAAATGCCACAATTGTGATTTGCAATTGTTTACATATTAGTTCAACGGTGAAATAGTTCAACGTAGTATTTGTttctattaaatttaataaaaaagcagaaTTAAACCGTAGTACAGCAATGTGATCGTGATTGTTTTAGCGTCACAGTTTTAAGAAGCTAAAGGGAAATAACGACACGGtgcaaaaaaatagtaaatgttCGTAAAAATATGcttgattttctttattttttgggggggggagGATGAAATAAGACCCGGATGTTTCTTTGTGAGATTCACCTGAATAGTTCTCAAAAAACGTACGAATGCGACCTCACTGACCCGACTCGAGTTGAGcgagtggagaaaaaaaaaaaaaatcgaacaaaaaaaccaaaccaaaacaaaaacgcCAGActactttatttataaattaagtgctatataaaaatgattcGATAACCAAAAGAATAAAGTGATAATGTGTGATAACTCTGCCTGTGAGATTGCTGATTATTGAAGTagttaaagtgtgtgtgtcgtATAGCGGTTCGTAGGTGTTCTAGCCTTATATTGCACATTGGTTACGTAAAATTAACTCTCGTTTTGCCCCGAATAACACAAAACGAGAGCTTTAACAAAAAACGTCTTCATTCTCCAACCAAATCACAGTCTGTCAAGACCAGTAGTCGACCGTAAAAGTGTGCAGACTGACAAAGCCGAGGACGAAAAACACTGCATTACCCATAATCCTCCCTGCCTTGCGTGACACATTCCATGTCCCTCCATCCCTGTCTTTTATACTTCAACCTTTTCCCGCTTTTTCTCTTCAAGGTAATGATCATTTTTTGAAGTATCGACACAATATTCAAAAAGCAGCCACAGGACACACCACATGGCGAGCGAGATATTTTACACCGAGAAACGAAGCGACCCGAAACACAACCTGACGGAAAAAACGAACACTCCATCATCGGCTGACGTCTTACACGCTCGTGCACGACGCGTCGGAGAACAGGAAGGGGCGGGGTTTCGGAGGGGGGGGAAGTGCGTGGGCTGGTCCAGCGGCTTGTGCGTGGAGGGGTGGGCGGGGCTTCCGCTACACACGCCACAGCAGTAAGTGGTTGGTGCTGTCGTCCCGCCCCACCGTCTCGCTGCTATTGGTCAGTCTGAAGTCTTCATAGCCGTCTCCTCCGCTGATGACCAGCAGGTTGGATTTGGCGGGCAGGAGGGTGGAGGCGCGCCGGCGGGAGGAGTCTCGTCTCTGCAGGCCTCCGCTGCTGCTCTCTGAGCTGTTCTGTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188242 lncRNA upstream 43729 18646556 ~ 18646836 (+) False LOC122323076
TU188216 lncRNA upstream 116211 18573819 ~ 18574354 (+) True G127460
TU188209 lncRNA upstream 127413 18559963 ~ 18563152 (+) True G127456
TU188180 lncRNA upstream 143842 18502441 ~ 18546723 (+) True G127439
TU188269 lncRNA downstream 37459 18730690 ~ 18781704 (+) False G127500
TU188406 lncRNA downstream 576432 19269663 ~ 19288546 (+) False LOC122323181
XR_006253152.1 lncRNA downstream 637091 19330322 ~ 19348479 (+) True LOC122362700
XR_006246957.1 lncRNA downstream 759299 19452530 ~ 19480221 (+) True LOC122323165
XR_006246958.1 lncRNA downstream 794339 19487570 ~ 19568485 (+) True LOC122323166
XM_043216730.1 mRNA upstream 31825 18654618 ~ 18658740 (+) False LOC122323077
XM_043216729.1 mRNA upstream 31825 18654619 ~ 18658740 (+) True LOC122323077
XM_043216728.1 mRNA upstream 31825 18654621 ~ 18658740 (+) False LOC122323077
XM_043216726.1 mRNA upstream 38401 18646362 ~ 18652164 (+) True LOC122323076
XM_043216727.1 mRNA upstream 38401 18648572 ~ 18652164 (+) False LOC122323076
XM_043216868.1 mRNA downstream 576380 19269611 ~ 19288556 (+) True LOC122323181
XM_043216867.1 mRNA downstream 582119 19275350 ~ 19288556 (+) False LOC122323181
XM_043216913.1 mRNA downstream 686804 19380035 ~ 19388663 (+) False slitrk3a
XM_043216914.1 mRNA downstream 689318 19382549 ~ 19388663 (+) True slitrk3a
XM_043216915.1 mRNA downstream 689707 19382938 ~ 19388663 (+) False slitrk3a
TU188207 other upstream 128955 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 128955 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 550312 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 762400 17922928 ~ 17928165 (+) True G127258
TU188266 other downstream 84537 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 84537 18777768 ~ 18782159 (+) True G127500
XR_006246956.1 other downstream 1309773 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 1393464 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 1854596 20547827 ~ 20549318 (+) False glipr1b

Expression Profile