RNA id: TU188266


Basic Information

Item Value
RNA id TU188266
length 1827
RNA type TUCP
GC content 0.39
exon number 2
gene id G127500
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18730690 ~ 18841535 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aagatttTAATAGTTATTGAATGTTCTACAtcttacagtaaatattatacaattacaAACTTGGCTTAATTATGTCACAGAGATCACTAACtgatcttcaaaaacaaaacaaaacaataaaaaaaccccaaaataataaaaacagttttacactTCATTTCACAAGCCTGATGTGGGTCTCCTTGCTCAAAAGGTGGAACGGCACGGCCTGGGCCGCTCTGGCGCAAACGCGCTCGGACCCGCCAGAACCACGCGGGAACGAGATCTCCATGCCGCCAGAACCGCGCAGTCGTGCGTCATACATACTACGGGGGCAAGGGCTCTCGAAACACTCACTGAAGGGAGATAAATTCTGGAAGACTTTCCCCTTTTTTGCGTTACATTTAGAATGCAAACAACGAAGTCTTATTCTCCATACGGGTCAAACACAAATAGCTGTTTTCCTAAACAGTAGCGTGAAACAGCAACCCCTCGTTTGTTTGCGTCAAAGCCTATGGTACATATCACAGGTTCTCAGCAAGAGCGTGAAAGCAGTGCCACAATTACTTTAGAAATACCTTTACATACTGGTGACGTGACACTGACTTCACTAGAGCTAATAACCCGTTGCATGCATCACGGGCGCTAGTAAACAATCCTTTGATCGATGCCCTGAAACCAAAGAACAGAACAGTGCATGGGTTTGCAATAGCAACATCAAAATGATCCAAacggaaaaaaaactaaaaaaatacaaaaaaaaaaaccaaaaaaacaaaacaggaaactGAAGCCTCTTCCACGCCACCACCGGGTGAAAAAAACACCCAGAAAAAggatcagtttattttaaaatgggaGAAACGCATAAAAAACCCTCGCTAGTGTGATAATATCAGAGTATCGTAACTGTTTAAAAGGAAtaataaaggaataattcatccaaaaaaaaaaaaatgcaagttcTGTTATCAAtcggatttatttattttttttcaacgtttcatttttggatgatcCGTCCCTTTAAATTCGTGACGACCCTGCGTTAAAACGTCCTGCGCGCCTGTAACGTCAACGTATTCGCTCACAGCTAATTTTCGCCGAAAGCTCAGCCATTACTTCAATCGCTGAACTCTGTCCTCcttgaaaggaaaagaaaagaagaagagaaagaaagactggGGAAATGCGtgcagaggaagaggaaaccCTTTGAAGACTTGTGCTCTGAAATGCCTCTCAACCACATGGACTGTATCACTCCACTCCAGATCAACTATAAAGATCTcctatttaagaaaaatgaacatcaatcattaattaaaactttaaataacacTTACGTAAAAAGCGCCTAAATTACATGTCAGAGTGGATGGTAACGTCCTCTATTTCAGAATCAAAACCCTTATTCTTTTTGCGGTGTAAAAGGTCACTCTAGTCCTAGAGTTCAGAGTGTCATATGTCGACTACAGTGATTAAACGCATCGATCAAGTCTCGTGAGGCGAACGTATGCAAAGACACGGAAAATATAGTTCACTGCTTGATATAATACTGTATAAGACCAGAAAAGGAAAGAGCAGGGCAGAGAGCGCACGAAAATGACATCGAATGTCATCAGAACAGAGCATGAGAACGGTACGAGATTCTCATTCAATCATAAACAAGTGAGCTGATTGGACTGATCTGAATTACTTACTGAGGACAAAATTCCATCGTTagacaaatattacaaatacaaatgctGCTTACCGATACAACAGGAAAATGATTATTCTGCAATGATGAATCTCATGGAACCTgtcaagaatatatatatatatatatatatttttttatattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188255 lncRNA upstream 84537 18690565 ~ 18693231 (+) True G127492
TU188242 lncRNA upstream 130932 18646556 ~ 18646836 (+) False LOC122323076
TU188216 lncRNA upstream 203414 18573819 ~ 18574354 (+) True G127460
TU188209 lncRNA upstream 214616 18559963 ~ 18563152 (+) True G127456
TU188180 lncRNA upstream 231045 18502441 ~ 18546723 (+) True G127439
TU188406 lncRNA downstream 428128 19269663 ~ 19288546 (+) False LOC122323181
XR_006253152.1 lncRNA downstream 488787 19330322 ~ 19348479 (+) True LOC122362700
XR_006246957.1 lncRNA downstream 610995 19452530 ~ 19480221 (+) True LOC122323165
XR_006246958.1 lncRNA downstream 646035 19487570 ~ 19568485 (+) True LOC122323166
TU188450 lncRNA downstream 734354 19575889 ~ 19576159 (+) True G127617
XM_043216730.1 mRNA upstream 119028 18654618 ~ 18658740 (+) False LOC122323077
XM_043216729.1 mRNA upstream 119028 18654619 ~ 18658740 (+) True LOC122323077
XM_043216728.1 mRNA upstream 119028 18654621 ~ 18658740 (+) False LOC122323077
XM_043216726.1 mRNA upstream 125604 18646362 ~ 18652164 (+) True LOC122323076
XM_043216727.1 mRNA upstream 125604 18648572 ~ 18652164 (+) False LOC122323076
XM_043216868.1 mRNA downstream 428076 19269611 ~ 19288556 (+) True LOC122323181
XM_043216867.1 mRNA downstream 433815 19275350 ~ 19288556 (+) False LOC122323181
XM_043216913.1 mRNA downstream 538500 19380035 ~ 19388663 (+) False slitrk3a
XM_043216914.1 mRNA downstream 541014 19382549 ~ 19388663 (+) True slitrk3a
XM_043216915.1 mRNA downstream 541403 19382938 ~ 19388663 (+) False slitrk3a
TU188207 other upstream 216158 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 216158 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 637515 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 849603 17922928 ~ 17928165 (+) True G127258
TU187919 other upstream 849603 17926100 ~ 17928165 (+) False G127258
XR_006246956.1 other downstream 1161469 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 1245160 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 1706292 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 1709613 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 3559439 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU424305 True 261 lncRNA 0.39 1 CI01000169 473647 ~ 473907 (-)
rainbow trout (Oncorhynchus mykiss) TU122418 True 476 lncRNA 0.44 2 NC_048566.1 4455510 ~ 4456381 (-)
eurasian perch (Perca fluviatilis) TU122418 True 832 lncRNA 0.34 2 NC_053119.1 39425296 ~ 39426186 (+)
striped catfish (Pangasianodon hypophthalmus) TU122418 True 7857 lncRNA 0.36 2 NC_047600.1 22928169 ~ 22936046 (-)
mexican tetra (Astyanax mexicanus) TU424305 True 502 lncRNA 0.37 2 NW_019172850.1 792844 ~ 848432 (+)