RNA id: TU188269


Basic Information

Item Value
RNA id TU188269
length 2051
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G127500
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18730690 ~ 18841535 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTATCAGACCACATTTCAAAACACTACACGGTCATTTTTCACTTTCTGGTTTTTGTACATTGTTCTGGATTCTATTTTTTCCgaacttcatttaaatatttttttttacttcatttgcaaaaaatatagttcttaaaatcatgctttttaattataatattattttatcatgtttgtactgttttatatatatatatatatatatatatatatatatatatacacaccacgAGGTTCATGAGTCACTCTGCGCTCTCACTCTCTCCCTTTACTTTAACGAAAAATACATAAGGGAATGTgctgtaatgtaaatgtattattaaaagcaaTCCATAAGCTGCAATTCAACATGAAGCAACCATGCTTCGCAAGGGCATAGTTTCCATCTGATTACACTATACTGCATTCACCCGCATGACACATGCATTACTAGACGTTATGACTTTCACATAAGATCAGAGAATCGCTTCTTCCCACTTTTGAGTGTACTATATATCGCAATAGTGGTCGCTTAGCCAACAAAACAACGTAAAGAGTGATACTGTTCTGTACTGACAATAATATTACTTCCAGAGACATTACCAAGACTAATGGTCTGCAGAGTAAATGCTTGATTTTCTTAATTACATCATTAAATATGAGAGTGTACCGTATAATTGGTTATTAAGTTACGTCTATTTGTCAATGTGCAATGCTTCGGTATGATAACATTTCATAGAATACTTGATATGTCACTTCTGAGTACACTATTCATGGATACAGGCGAGGCCTTGGGATAGGAAATCAAgattctctttatctctctctctctaaaaatgctgtaaattacaattaaaagccATTCAAGCAGGCCGTTCGTATTATTGCATTGAACAACTCCGTTCCTACGCCTAAAATCTGTGCAACGACGGGCCTAAAGGCCCAAGGATTCACAGAGGACCAGGGGTCAGACCCACTCTAGACCCGGAGCTGATTGGAAATGAATGCCGGAACGCCATACCtccctcgtgtgtgtgtgtgtgcgtgtgtgtttttttgcttttagtgCTATCTACGATGTTGCAAAGTCCCTTTGAATCGGATTCGATCCTAATCGTTCCCGTCAGAGTAGCATCCGTCCTTTCTGGCCTCGAAGTTGGCACGCGTTTCGATGCCCGCGGGGACGACATCGCACCCAGAGGCTCCAGCTAAGTGCCAccgatacatttttttttttttttgtattcctcAATATTCACGGTGAGCGCATGCCGCGGGAGCACCCATGCGcgcacatttttataaatcgCATATACACGTTATAGTTTCGAAGCTTACGCTATCCTGACACATAAGCTAATAAAGTAACCGGCTCACTCAAACGTTCTCTATTTAGTGAATAACTAAGATTACTGTATGTACTCGATATCCTAATGAAGGTTAAACCACGTTTGCACTGCCCTACTAATGATATATTCCTTACAAATCTACATGAACAGCTACAAGCTGGAAGACACCCTTGTTATCGATGACAGAACGAAATGAAATTTTTCTGGAACCGTTCCCAAGCGCTTCGGGAAGGCCGAACTCAAAATCtctgctgtaaataaataaaaggaaaacgaCGAACCCTGTGCTAATATCTAAAGGTTATAAAATTTGGCAGCATAAGTGGATGATTATGATCCGAGTGGTGCTGATATTGCGTCGGTACATTCCTACACACCAGCGTTTTATACTGAACACAAAGACGGGTCGTGATTGGTCGAAATCATTCTGGAGCTCTTGTAGAATAACTATGGAACAATGAAGAATTAAAATATCCTAATGCAAGAACATCATcccaaaaaaaaatgagaaggaaaaaaacgCGAAAACGAAACGAAACGAAAAAGAacgaaattaaataaaaagataaaaaagcagcttttacAAAAACACGTAAGAATGCATAAAGTGACCCTTgcacttttttctctttttgttcttgCAAACAGACGTGGCGCCTCACTGTTGAGCACAGAGCGCCGATGTAAGACTTGAGTAGTTGCATACAATGTTTGACTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188255 lncRNA upstream 37459 18690565 ~ 18693231 (+) True G127492
TU188242 lncRNA upstream 83854 18646556 ~ 18646836 (+) False LOC122323076
TU188216 lncRNA upstream 156336 18573819 ~ 18574354 (+) True G127460
TU188209 lncRNA upstream 167538 18559963 ~ 18563152 (+) True G127456
TU188186 lncRNA upstream 202348 18527129 ~ 18528342 (+) False G127443
TU188406 lncRNA downstream 487959 19269663 ~ 19288546 (+) False LOC122323181
XR_006253152.1 lncRNA downstream 548618 19330322 ~ 19348479 (+) True LOC122362700
XR_006246957.1 lncRNA downstream 670826 19452530 ~ 19480221 (+) True LOC122323165
XR_006246958.1 lncRNA downstream 705866 19487570 ~ 19568485 (+) True LOC122323166
TU188450 lncRNA downstream 794185 19575889 ~ 19576159 (+) True G127617
XM_043216730.1 mRNA upstream 71950 18654618 ~ 18658740 (+) False LOC122323077
XM_043216729.1 mRNA upstream 71950 18654619 ~ 18658740 (+) True LOC122323077
XM_043216728.1 mRNA upstream 71950 18654621 ~ 18658740 (+) False LOC122323077
XM_043216726.1 mRNA upstream 78526 18646362 ~ 18652164 (+) True LOC122323076
XM_043216868.1 mRNA downstream 487907 19269611 ~ 19288556 (+) True LOC122323181
XM_043216867.1 mRNA downstream 493646 19275350 ~ 19288556 (+) False LOC122323181
XM_043216913.1 mRNA downstream 598331 19380035 ~ 19388663 (+) False slitrk3a
XM_043216914.1 mRNA downstream 600845 19382549 ~ 19388663 (+) True slitrk3a
XM_043216915.1 mRNA downstream 601234 19382938 ~ 19388663 (+) False slitrk3a
TU188207 other upstream 169080 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 169080 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 590437 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 802525 17922928 ~ 17928165 (+) True G127258
XR_006246956.1 other downstream 1221300 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 1304991 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 1766123 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 1769444 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 3619270 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile