RNA id: XM_043216868.1


Basic Information

Item Value
RNA id XM_043216868.1
length 3081
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC122323181
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 19269611 ~ 19288556 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCCCTAAAGCCTTTAAATGCGCGTAAATAAAGGTCCGTCGCGTCTCTCGCGAGGTTTGAAGTTGGACGCGCCGAGCGCACTGCGCGCAAGAGGTGGATGAGACGCCGGCAGTAAACCGCGAAAACCCAAAACGCGTCTCCTGGAAGGAGAGGCAGGGAATCACCGTCCTGCGGGCCTCGAAGACATCATCATGGGCATTCACATCAAAGCTTCTTTGCCAATCTTGGCTCTGTTGTTCTTAAAACATGCAGCAGGGCAAGATGAACTGATCGTCTCCACTGACAAAGGCAAAGTTAGAGGACTGAGGCTTCCTTTGTCGGGTGGTTCAGGGTATGTGGCGGCCTTCCTTGGGATTCCCTATGCCAAACCTCCATTGGACCAGCTTCGCTTCAGACAACCAGAGCCTGCTGATGTGTGGAATGAGATACGAGATGCCACTCAGTACTCCAATTCATGCTTTCAGTATCCAGATACATTGTACCCAGGATTCCCTGGAGCTGAGATGTGGAATCCCAACACGAAAATTAGTGAAGACTGCCTGTACCTCAATGTTTGGACTCCTTCATCTTCATCTGACCTCCAGAACCGAGCCAAACCCTTAGTCCCAGTTATGGTGTGGATCTATGGTGGAGGCTTTTCCACAGGTACGGCATCCCTGGATGTGTATGATGGCCGTTTCCTCAGCCATTCGCAACAAGTCGTGGTGGTATCCATGAACTACCGCGTAGGAGCATTGGGCTTCCTGTCTTTACCAGAAAGTGAGAGCATTAAAGGTAATGCTGGTCTATTTGACCAGCGCCTGGCTCTCAGTTGGGTGTCAAGGAACATTGCTGCGTTTGGGGGTGATCAGTCTTCTGTAACATTGTTTGGGGAGAGTGCTGGTGCTGGCTCCGTGGGACACCATTTGCTTTCACAAGGCAGCCACGGACTATTCACCCGTGCAattctccagagtggcagtcCCAATGCTGTGTGGGCGGCAGTGGAGCCAACTCAGGCCTGGAACCATTCCTTGACTCTGGCTCAGCTTCTGAACTGCCCACTTGGACCATCTGCTGATGAAATGGAGGCTTGCTTAAGGGCAGTTGAACCTGAAAAGATAGTCAGTCTTCAATTTGAAGTCATTCCTGATCCTATGATGATAAGTGTGCCATTTCCGCCAACAGTGGACGGAGAATTTCTCACAGACATGCCAAGTGTTTTAATCCAGTCGGGGGATTTTCTTAAAACTGAACTGCTTTTGGGATTGAACAAGGATGAGGGGACGTACTTTCTTGTTTATGGCGCACCTGGATTTGGCATCCATAACCAGAGTCTTATCAGTCGAGACCAGTTCCTCGCAGGTGTATCCTTGGGCCTCCCTGGTTTCAGTGACCTAGCCAGAGAGGCGGCAGTACTTCAGTATACCGATTGGACAGATGAGCAAAGCAAGCCAAAAAACAGAGAGGCCCTAGGCTTGTTGGTGGGTGACCGCTATTTCTCATGCCCCTTACTGGATTTTGCCCGTAGGTTTGTAGAGAATGGCGGCAGTGCCCGATTGTTCCTCTTTAACCATCGTTCCACCTTCAACCCCTGGCCTGAGTGGATGGGTGTAATGCACGGAGATGAGATCCCGTTTGTTTTTGGGATTCCTTTGAATCAGACGTTTGAATTCTCGAAGGAGGAGGAGGCCCTGAGCAGGAGGATCATGGAGCACTGGAGCAACTTTGCTAGAAGTGGGGATCCGAGCGTGGAGGGAGCAGATTGGCCGCCGTTCACGCTGGAACATCAGCAGTATGTCACGCTTAACACTGGCCTGTCACAAACACTCCGGATGCTCCGAGCCCAGCAGTGCAAGTTCTGGGATAGTTTCCTGCCAAAACTGCAGTATGTCACAGtgAGTATTGATGAAGTGGAGTTCCAGTGGAAGTCTCAGTTCAACCGCTGGCGTTCTTACATGCTGGACTGGAAGAATCAATTTAACGACTATGCCTCTGTCAGAAAGCAACAGTGTGAAGACCTTTAATGTCTCACCACATTTCCCCAAAAACAGCCCATGCAGTGCACTTAACTTCAGAAAGCATATAGAATCCACAGAAACTTTCCTCCTCCTATATCTTCACAACATGGTGCCTTTTTTGCTTCCTCTGGGCCTTGTCTGGAAGAGAACTTCTCAACTCAGATAGGGAATCCATATTCAGATACTTTGATAAGTTTAAGCGATACAACAAAATGTGTAAGCCGCTCTGGGTAAAAGTATGTATAGCATAAATGAAAAGCTAtaattataacacacacacacacacatttgtgtgttttgttttgtttttctttagtttttcttttacagcATAATTATACCACATGAAAGCATTTATTCCGCAGCCTTTCATTTATGCtggattttaattaaactttaaataaaaaaatatatcattacaCAAATGAGAAACTAAtgacaatcatttaaaaaaatgacaaatgcaaaaaaaaaaacatatataaatattatgtgtatgtatgtgtatttgtgtaattGCTATCTTAATGGCCAAAAAGTTTTGTTCGTTTGGTTTGGTAATGTGTGACTGTTTAGTGCTGCAATTTTATGCGTTGTTTAATATGgaatatttttcatgatttgCTTGAGGCTTGTTCCTTGTTTTGTtaacaaaacagtaatttttAATACTTTCCATTCTAATTAATGTGTTTGAGTGAATCTATAgaattaaatgtgaatgaaCGTGTAAATTCTGCATTTTATGATGAAATTCGGGTTTAATGCAGTATTGTTAACAGAAAGCTTCCTTCAAAAAGTAATAAAGCGCAGTGTTTACACGGCACATTTTGGTGCTTTAAACAAGTACTTCTAGAATGGCAATGAAGATGAATGTTATTGTTGCAGCAACGTGATGCTAATATTACACAATTAGTCACTGTTATGACTCTGTCTGTGCAAGAGTTTATGTAACGTtgtctttccttctttcttttttctgtccgtcttttttttttcactaatcaCAAAATAGCATTATTGCTATCTGTTCTTTTCAAATAGTTAGCgtgacaaaatgtaataaactacTTGCTGTTC

Function

GO: NA

KEGG:

id description
K01050 BCHE; cholinesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188269 lncRNA upstream 487907 18730690 ~ 18781704 (+) False G127500
TU188255 lncRNA upstream 576380 18690565 ~ 18693231 (+) True G127492
TU188242 lncRNA upstream 622775 18646556 ~ 18646836 (+) False LOC122323076
TU188216 lncRNA upstream 695257 18573819 ~ 18574354 (+) True G127460
TU188209 lncRNA upstream 706459 18559963 ~ 18563152 (+) True G127456
XR_006253152.1 lncRNA downstream 41766 19330322 ~ 19348479 (+) True LOC122362700
XR_006246957.1 lncRNA downstream 163974 19452530 ~ 19480221 (+) True LOC122323165
XR_006246958.1 lncRNA downstream 199014 19487570 ~ 19568485 (+) True LOC122323166
TU188450 lncRNA downstream 287333 19575889 ~ 19576159 (+) True G127617
TU188463 lncRNA downstream 334457 19623013 ~ 19623282 (+) True G127630
XM_043216730.1 mRNA upstream 610871 18654618 ~ 18658740 (+) False LOC122323077
XM_043216729.1 mRNA upstream 610871 18654619 ~ 18658740 (+) True LOC122323077
XM_043216728.1 mRNA upstream 610871 18654621 ~ 18658740 (+) False LOC122323077
XM_043216726.1 mRNA upstream 617447 18646362 ~ 18652164 (+) True LOC122323076
XM_043216727.1 mRNA upstream 617447 18648572 ~ 18652164 (+) False LOC122323076
XM_043216913.1 mRNA downstream 91479 19380035 ~ 19388663 (+) False slitrk3a
XM_043216914.1 mRNA downstream 93993 19382549 ~ 19388663 (+) True slitrk3a
XM_043216915.1 mRNA downstream 94382 19382938 ~ 19388663 (+) False slitrk3a
XM_043216816.1 mRNA downstream 115765 19404321 ~ 19451211 (+) True LOC122323148
XM_043264320.1 mRNA downstream 311456 19600012 ~ 19603818 (+) True LOC122362761
TU188266 other upstream 428076 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 487452 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 708001 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 708001 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 1129358 18138535 ~ 18140253 (+) True G127292
XR_006246956.1 other downstream 714448 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 798139 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 1259271 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 1262592 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 3112418 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile