RNA id: TU188509


Basic Information

Item Value
RNA id TU188509
length 1644
lncRNA type sense_over
GC content 0.34
exon number 2
gene id G127663
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 19985741 ~ 19991636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taatatttttttttttttttttttttttttctctttgtaaaaATAGTCTATTTACTCACTTTAATTTTTACctgtttaatttaaacaattaatgagttatcaaatataaaaatcatcaaTCCTGATGTTCCTAAATATAGACTTCATTTTCTTCATGCAATatataattaacttttttcccttttttattttggagtcCTGGATGTATTTTTGACTGGCTTTGTGAGATCCGCTTTTGCTGTATGATTACAAGATTagttgtttttactttaaaatatatatatttaaaatataaaaaaataaaaataaaaatggcagtaCATGAGAATTCTATCACAGCACTAAAAGGCCAGTTTGGATTGTTTTAGATAGATTTTAAGAGGCTTAGAAAAGCACTCCATTTACCAAGCAGAACAGATGCATATGTGTGTTAATGCTCTCGGATATTATGTTTACAATATTTGAACATGTATTGATGCTTAGGTTCTTGTATAACAGCCATTCAGGAAGTCCTCTGGTAAAGCCAACTgtgtttgaacaaaaaaaaggacTAGGGATAAATGGATATTGAAATTTTGAGCCACTCTGACATTTGATTCATCGATATCCATAATGCTAGATTCTAGATGAAATAAAACTACAGAATTAATAAGGCTGTTGTTACTCTGCCATTAATATCAGTGTGATTCCAGcgttttatttatgttacagTGAGCAATGAATTCGTGTGCCAATTTTGTTATACAGCGTTAACGACTGTCATGGCAACCAAAACTCGTTTTAGACATTCCTTTCTCGTCATGATTGGCTTTTCACGCGGCGTAACTCCGCTTGGACTAGAATGGCTTGGTGtcgtttatttttactttaaagaaaCGTTTTGAGCCTTTCCAAACAAGTCTACGAGTCGCTCGTTTTTCTGTAAAGGGAATATGTACTATATGCAATCCCTGAGGATCATGTTTTAAATTTGATATGAGAAGACTTGCCTTTTATCAGCACATCACTAAGAATGTATCTCGTGCTTTTTATACAGTGTGTTAATTGGGTAGAAGAGGGAGTTTTCTTTGCGTTAGAGTAATTAGAGTTTTGCATTCTGTGCTATTATTACTACTGCAACAGTATTTGCCTGACCTCaactctatttttaaaaacatgcttacGTAATTTTAGCTGATACTCGACTGTAAAACTGACTGTAAAGAGGGATTTTTGCTCTTAAATGACCTTTATTAGCCTCAGAAGAATAGCATTAGGGAATAAACCATTACGTATGTTATTTCTCGGTGGTTTAGCCAAGCGCGTTCCCATCATCGGTCTAATGCTATCAACAAAATCTGGAAACTTCAGCTTTCACCTTTTCCCCACATTCGAGCTTTCTAGCGCTGCGGGCGTCACCGAGCGGGAAAACGGGTTACAAGCCGAAACGCATCAACGCTTCAAGCTCATTTTAGCGGCGTCCGAACTTGGAAACGTTGGAAACAGGGTCGACAGCCGCAAAGCAGAGATTCTGAAATCATGTCTGTAATAAATGGTGTAAACAAATATTGTTCTGATACTTTCAAGTGTCACGACGTTATGATGTTCTTTCTTATGTAAAGCTCTTTTACATAATAAAGTCATTAGATTTAAAAGCTGTTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188470 lncRNA upstream 60939 19781765 ~ 19924802 (+) True G127637
TU188465 lncRNA upstream 359220 19626153 ~ 19626521 (+) True G127632
TU188463 lncRNA upstream 362459 19623013 ~ 19623282 (+) True G127630
TU188450 lncRNA upstream 409582 19575889 ~ 19576159 (+) True G127617
XR_006246958.1 lncRNA upstream 417256 19487570 ~ 19568485 (+) True LOC122323166
TU188679 lncRNA downstream 211112 20202748 ~ 20211417 (+) True G127766
TU188681 lncRNA downstream 211112 20202748 ~ 20215231 (+) False G127766
XR_006253191.1 lncRNA downstream 229668 20221304 ~ 20224584 (+) True LOC122363139
TU188698 lncRNA downstream 265076 20256712 ~ 20281295 (+) True G127780
TU188708 lncRNA downstream 333694 20325330 ~ 20383758 (+) True G127785
XM_043216817.1 mRNA upstream 31542 19945146 ~ 19954199 (+) True LOC122323149
XM_043264324.1 mRNA upstream 44928 19938028 ~ 19940813 (+) True LOC122362767
XM_043216825.1 mRNA upstream 49982 19928226 ~ 19935759 (+) True LOC122323153
XM_043216839.1 mRNA upstream 77519 19903146 ~ 19908222 (+) True LOC122323160
XM_043216837.1 mRNA upstream 84263 19885134 ~ 19901478 (+) True serpini1
XM_043216832.1 mRNA downstream 2953 19994589 ~ 19999743 (+) True cog8
XM_043216820.1 mRNA downstream 11368 20003004 ~ 20015706 (+) True wdr59
XM_043216821.1 mRNA downstream 11368 20003004 ~ 20015706 (+) False wdr59
XM_043216822.1 mRNA downstream 11368 20003004 ~ 20013705 (+) False wdr59
XM_043216819.1 mRNA downstream 25738 20017374 ~ 20055307 (+) True glg1b
TU188266 other upstream 1144206 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1203582 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 1424131 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 1424131 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 1845488 18138535 ~ 18140253 (+) True G127292
XR_006246956.1 other downstream 11368 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 95059 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 556191 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 559512 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2409338 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027038 True 2737 lncRNA 0.35 1 NC_007129.7 5837098 ~ 5839834 (+)