RNA id: TU188708


Basic Information

Item Value
RNA id TU188708
length 1348
lncRNA type sense_over
GC content 0.34
exon number 2
gene id G127785
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20325330 ~ 20383758 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gatttttttttttttttttttgatctTCATGCGTATAAACCACTTTATGTGCAAAATAAGAACAAACACAGACTGACAGCGGGATTTTGTATAATAACGTGACACAGTAAATATGCGAGTACAATGTTTGAGACAatgtcatacaaaaaaaaaaaaagatggcttACAGAACCTGAGAATGTCATTGCATCCAATGTTTATAGTCTATCAAGGCACTGTTAGGTTTagctttcattgtgtttctatttttatctaGATTCACTGTCAGTGTTGCAAATGACATATTGATTCTAACATATTAAATTGATTCTAACATATTGATtatcaaactgtattttaagaaagtaacaaaatatgtaaatcacaataccaGTGCAACAGCCAAGAAAAAGACCTATTAAAAACAGTGCAGTTAAAACTAGGCAGATTTGCACTTCTGTACTGTTCAACTTATAATTTActtcaaaatatcaaattaaagaGGAAAATCTTTGGAAAAAGAGGTAAACAGTCCATCTGGCTCAAAAGATCCTATCATGAAACACAGGTTTACACAGTGTGCTATAATCAGTCAGAAACACAGCAGCAccaataaaacaactaaatgcaGTATACAGTAGAATACGGATTGAGATATAAAGTAAAAACTATATGGGCTTTAAGTTCAAGCATTTTAAAGTCAACACTAAACTATTCCCAAGCCTGTTTAAAAGTtaagttttgacattttatctCATAACAACAGCTGATTTTTTCCTTGCAAATATGGGAAAACACAAATCTATAAACtctgaatattttcatttcacaattctatttattacaaattattctgaattgtgagatgaaGAAGCgaaattatcattttatgtatttattattattattattatttttaatctctatattgattacatttatttctgcacGAAACAGGATATTTTGTACAATTCGTTTTAAccttacataaaatatttgaaataatgtaCGCTAATGGATCTTATGGGGTAAGACCAggaatatgaattaaaaaaagaaaaagccaatACTGATTTCATGTTGATTAAAGAGCTTGTTGTGATTCATCGGATCTCGGATTCAGCTGGTTTGACTCCACGTGATGTTTGTGGCTCTCAGAGATTGCCGTGGATAATTTTGGGGCATTTCTCGGGGGCGATGCAGTGAGCGTTGTGCTCCACCAATCCAGCGGGACACTGGCATCCCGGCACGCAGGGTTTGAAGCAGTGGGCCTCGATCACGCCGAGTGGCACGTCTTTGTTAAAACACGTCTTAGGGCACGGAGGCCCACATTCATCAAACACATAACCCCGGTCCAGCGGACAGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188698 lncRNA upstream 44035 20256712 ~ 20281295 (+) True G127780
XR_006253191.1 lncRNA upstream 100746 20221304 ~ 20224584 (+) True LOC122363139
TU188681 lncRNA upstream 110099 20202748 ~ 20215231 (+) False G127766
TU188679 lncRNA upstream 113913 20202748 ~ 20211417 (+) True G127766
TU188509 lncRNA upstream 333694 19985741 ~ 19991636 (+) True G127663
TU188810 lncRNA downstream 178325 20562083 ~ 20572310 (+) True G127860
TU188825 lncRNA downstream 202293 20586051 ~ 20588863 (+) True G127873
TU188827 lncRNA downstream 213449 20597207 ~ 20600519 (+) False terb1
TU188764 lncRNA downstream 256258 20640016 ~ 20641059 (+) False LOC122362661
XR_006253183.1 lncRNA downstream 258007 20641765 ~ 20647639 (+) True LOC122363025
XM_043265078.1 mRNA upstream 4130 20311779 ~ 20321200 (+) True lmf2a
XM_043264561.1 mRNA upstream 14197 20286465 ~ 20311133 (+) True c2cd5
XM_043264562.1 mRNA upstream 14197 20286465 ~ 20311133 (+) False c2cd5
XM_043264564.1 mRNA upstream 14197 20286465 ~ 20311133 (+) False c2cd5
XM_043264563.1 mRNA upstream 14197 20286465 ~ 20311133 (+) False c2cd5
XM_043264958.1 mRNA downstream 30258 20414016 ~ 20422329 (+) True LOC122363067
XM_043264111.1 mRNA downstream 56386 20440144 ~ 20445367 (+) True si:dkey-88e18.2
XM_043264827.1 mRNA downstream 87343 20471101 ~ 20504374 (+) False vwf
XM_043264825.1 mRNA downstream 87344 20471102 ~ 20504374 (+) True vwf
XM_043264826.1 mRNA downstream 87396 20471154 ~ 20504374 (+) False vwf
TU188630 other upstream 237749 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 311544 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1483795 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1543171 18777768 ~ 18782159 (+) True G127500
TU188208 other upstream 1763720 18560366 ~ 18561610 (+) False G127456
TU188799 other downstream 164069 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 167390 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2017216 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 2051048 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 3073342 23457100 ~ 23579802 (+) False cdh13

Expression Profile