RNA id: TU188810


Basic Information

Item Value
RNA id TU188810
length 329
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G127860
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20562083 ~ 20572310 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctgtgtgtgtgtCTGTGTATTTGGTGATGGTGCTGCCCACTTCGAGGTCCTCATGTGTCatgatttttttcctctcaggCTCAAAGACAGGCGGCTCGTTTACATCCTGCACTGTGATGGTGACGGTAGCAGTGGAGGTGGCCAAAGGAATAGCAAAAGGAACCTCGTTCTTGACCACCACCAGCAGAGAGAAAGCGTTGGTCTGCTCAAAGTCCAGACCCTGAACATATATGAACaaatttatttaccattttcatatattttactgtCTCTCTTAAACTATGTAATGCATccttacagaaaataaaacaaatttattgcATTACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188708 lncRNA upstream 178325 20325330 ~ 20383758 (+) True G127785
TU188734 lncRNA upstream 186248 20373854 ~ 20375835 (+) True G127800
TU188698 lncRNA upstream 280788 20256712 ~ 20281295 (+) True G127780
XR_006253191.1 lncRNA upstream 337499 20221304 ~ 20224584 (+) True LOC122363139
TU188681 lncRNA upstream 346852 20202748 ~ 20215231 (+) False G127766
TU188825 lncRNA downstream 13741 20586051 ~ 20588863 (+) True G127873
TU188827 lncRNA downstream 24897 20597207 ~ 20600519 (+) False terb1
TU188764 lncRNA downstream 67706 20640016 ~ 20641059 (+) False LOC122362661
XR_006253183.1 lncRNA downstream 69455 20641765 ~ 20647639 (+) True LOC122363025
TU188846 lncRNA downstream 69496 20641806 ~ 20644285 (+) False LOC122363025
XM_043216579.1 mRNA upstream 5456 20551148 ~ 20556627 (+) False si:dkey-30c15.17
XM_043216582.1 mRNA upstream 5456 20551158 ~ 20556627 (+) False si:dkey-30c15.17
XM_043216580.1 mRNA upstream 5456 20551173 ~ 20556627 (+) True si:dkey-30c15.17
XM_043263997.1 mRNA upstream 12726 20545992 ~ 20549357 (+) True glipr1b
XM_043264099.1 mRNA upstream 23465 20532906 ~ 20538618 (+) True cers3b
XM_043264892.1 mRNA downstream 17374 20589684 ~ 20598619 (+) True terb1
XM_043264178.1 mRNA downstream 37627 20609937 ~ 20618180 (+) True neto2b
XM_043264204.1 mRNA downstream 57433 20629743 ~ 20633636 (+) True arf5
XM_043264202.1 mRNA downstream 62535 20634845 ~ 20641011 (+) True LOC122362661
XM_043264203.1 mRNA downstream 62535 20634845 ~ 20641011 (+) False LOC122362661
XR_006246928.1 other upstream 5456 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 12765 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 474502 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 548297 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1720548 18777768 ~ 18841535 (+) False G127500
TU189467 other downstream 1828664 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 1862496 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 2884790 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 3152326 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 3877455 24449765 ~ 24457560 (+) True G128858

Expression Profile