RNA id: TU189310


Basic Information

Item Value
RNA id TU189310
length 3220
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G128251
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 21638410 ~ 21641629 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTACATTtcttttcagttcatttgaGATTCACCCAATATAATTTTATCAAATTCTATCATTATTTTTGCTAGGTCTCTGGCTTAGCATTCTTATGTTGCCGATCATAAACATCTCAGAGATCGTCTGTTAACTCGATCGTCCGAGGCAACTGTAAGCATCTGATATAAACGTTCGAAAAAAGGGCCACGTTGACTGTCACAATTCAAGGAAAATTTCATATGCGATCGAACCACGAACGAGTGCATCATCTGATGCGAAATGCAGAAGACTCTAAAGACTAAACAGGCTCCGATTAGTAGAGCGAAGCCTTTTTTTTGTCGTGTCAGAAGTCACACGCTTGTGTCCAAGTGTCTAAAGCATGTTGAATGTGCTTCGTACCCTCCCCGTCCCGTCTGCAGGGCCCCCGCTATCCGACGATTGCGTGTTTTACTGTACGTCGTCCAGATACTTCATCTGTCAGATTTTGTTCCAGCACGACAGACATGATATCACGAGCGTGTCAGATATTACATCCACATGTTGAACCACTATGCGAAAACACAGCACATGACAGGTTATAAAAACTGCTCAGCTCTGGAGAATCGTGCATTTATGATGGTTgaatgtatgtttgttttatttatttatttgatagaaAGTCCGTGCATGATATTAGACAATATCGATCAAAGCTATTGCCAACGGGGGAGCATTTCCGTGTTCCTTTGAATGTTTtggaagaagaacaaaaaaccaATGGCAATGCCTAGAgctatgaaaaatgaaatatttatccATCACAATCCAAAGGCCAAGTATCCAGgaataaaataacatgcttCTCTCATCGTTTCGGAGAAGTTTTAACATTTGACAGCTTAAAAGCTttgtctattttaaaatataaacttacaatcagtgtttgcaTGAATTCTACGGCTTgtcattcatgcaaaaaaataacgATGGCTTTATTAGACTGTATGGagcttttatagttttttttttattattattatttctttgttaAGCCTTTTTGGTGAGGAGGCTGTTAAAGTGGTGTAATTACAGTAACGATATTAAGTGCAACTGAAATTAAAGGCGGAAGGTTTAATGTCATAGTGATTGCCAAATGAGAATGAAATGTAAAGAAACGCACGAGGTAGATTTAaagtaaaagtgtgtgtttagtttACTGGATGTCCGCAAAATATCGCTTGCACCTGTGCGTCCACGTCAGGCTTTTTCCTTCGGAATGAGATgaatttttctttctgtcttcacTGATGTAGCATTGAGTTACAGACCTAAATATGCAGTGCATTTATGAATCATTACAGACGTTTTTGGACTCCTCGGAGGTTTTTCGGGATCTGGATTTCTCATCTCAGGCCTGGGGTGGAGGCTGTAGgatgtaacatttaaataccTCACTAAACGACGACGTGAGATGTGATTCGATCCAAGAGAGCTCAACTAACTCCCCTCTTTACAAACTGTACCGGGGTTTAAAACGCCAGTCGAGATGTATACAAACCCCACAGAGACCGCTTCACCGTTTGAACGCAAATTGATCCCATGCCATGTCCGACAAAGAACGTCCGCAAAACATGAAACAGGTTAATGACATGATtattctaaaactaaaaacttgaAATCTGGCAGTGCCTGCACGGTTAGTCAAGAACAGCGAATTACCCAAAAGTAGCATTTATCTGGGGATTTTATTGGCTCGCTTCAAAAGTGTTTTCATATGTTATCCATCACGATGGAGTACAAGagattattttggttttgtatatttaatattgcacACGCGAATGTTTTATGacatactcttaaaaataaaggtatacaaaagttgaataaaatcataaagcGACGGTGAATAGTTGtaccaaaaaatgtaatcctcAGGCCATTCAGTATCTAGATGAATTTAGGTCCGACAGATCctccgcagtgaatgggtgccgtcagaacgagagtccaaaaagctgataaaaacatcacaatcatccacaaatgaacacacaattacacaattaacatcttgtgagattaaaagtttattatatatataaaagaaacaaataagtCTATAATATGATGATGTTTCTTCCGgttaaaaaaagtcagtttgCTGTTGTCCTCTCGCATCTAaattaaacatgtttgtttCCAACTGTTTTAGATTTGTAAAcagactttttcactggaagaAGCAATATCATGGATAGAGTTACAAATTCATTTCACAAGATGTTAcatgatggactggagttataagtttttatcagctctcattctgacggcacccattcactgcagaggattcaaCGGTGAGCAATTGATCTAATGCTACATTTTGATAAATTGTTCAGCTGatgaaataaacatacacatctTGGAACAACTAAGTGTTAGTAATTTGTTTGGGATAAACTATTCCTTCAAAGAAACCATTATTTTTCTTAGtgtgaagaatattttaatcatctaaagaaactttttttcttcacaaagaaCGTTTTATGGAATGAAATGGATATCTAATTGACGCTTAAAGCAGCCGATAAAGAACCTCTGTTTTTAAGAGTATATTGTAGATCAACGGATTAAgaagtaatgaaaaaaagacactcCAGAGTCTAGATCATGAATCCAAAAAGTTAAAATCCGTTTCATACAAAGCATTCCACTTTACATAAGAGGGGACAGACATTTTCAAGTGTGTTCAGGTTTGCATGGTGCTCCCGCGATGCCCTTTTGACATTTCGAACCTCGCATGAAAGGTTAGACGTGTACAGACGTGCCCCCCTCATGTAAAGAGGAATCGGATGCgtgtatttattgtatgttttctgAATGCTGCTCTCAGCTGCTGCCTCATAGGGCTGCCATGTGTCTGTATTTTACTGGTGTTGGTGCTCGGTGTGCCGGAAAGTTTTCACTGAGGTTGCGCTTCTTttcctgagtgtgtgtgtcgaAATCACTCTTTGATTCGTGTGTGTTCATTGGTGGGGAGGGGCAGGGGGCGTGGTACGCGCCCAGAAAGCCCCGCCCACCTaacgtaaatataaataatattcttttgtGGAACTTGACACGCCTGAAACGATTTTGTATACATTTGTACAATAATGTTGttcaagaaaataaaactaagaaGTTTGTAAAgtttacaaatgtgtaattcttgtgcaaatacaatatattcacaataaaagttTATCATT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko05012 Parkinson disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189266 lncRNA upstream 169857 21466778 ~ 21468553 (+) True G128216
TU189193 lncRNA upstream 472337 21165272 ~ 21166073 (+) True G128158
TU189192 lncRNA upstream 475659 21161886 ~ 21162751 (+) True G128157
TU189180 lncRNA upstream 509377 21128553 ~ 21129033 (+) True G128149
TU189179 lncRNA upstream 557119 21080769 ~ 21081291 (+) True G128148
XR_006246944.1 lncRNA downstream 52817 21694446 ~ 21835021 (+) True LOC122323089
TU189407 lncRNA downstream 392042 22033671 ~ 22068953 (+) True G128318
TU189419 lncRNA downstream 467844 22109473 ~ 22110458 (+) True G128329
XR_006253188.1 lncRNA downstream 745970 22387599 ~ 22388615 (+) True LOC122363071
TU189448 lncRNA downstream 767858 22409487 ~ 22411951 (+) False LOC122363143
XM_043265037.1 mRNA upstream 88 21550145 ~ 21638322 (+) True LOC122363109
XM_043265038.1 mRNA upstream 88 21550145 ~ 21638322 (+) False LOC122363109
XM_043264292.1 mRNA upstream 92276 21477328 ~ 21546134 (+) True pclob
XM_043263922.1 mRNA upstream 171817 21428727 ~ 21466593 (+) False sema3e
XM_043263921.1 mRNA upstream 171817 21428728 ~ 21466593 (+) True sema3e
XM_043216790.1 mRNA downstream 14692 21656321 ~ 21681835 (+) True LOC122323126
XM_043265069.1 mRNA downstream 278478 21920107 ~ 21922673 (+) True lepa
XM_043265071.1 mRNA downstream 278481 21920110 ~ 21922234 (+) False lepa
XM_043265070.1 mRNA downstream 278587 21920216 ~ 21922673 (+) False lepa
XM_043216627.1 mRNA downstream 312674 21954303 ~ 22015456 (+) True mical3a
XR_006246928.1 other upstream 1081783 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1089092 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 1550829 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 1624624 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 2856251 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 759345 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 793177 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 1815471 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 2083007 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2808136 24449765 ~ 24457560 (+) True G128858

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU95738 True 3966 lncRNA 0.37 2 CI01000013 9885667 ~ 9889683 (+)
bowfin (Amia calva) TU95738 False 438 TUCP 0.54 3 CM030129.1 6666606 ~ 6668834 (-)