RNA id: TU189448


Basic Information

Item Value
RNA id TU189448
length 1477
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC122363143
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22400944 ~ 22411957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatatatatgtatagaaagagagagaatagaaTATCACATCCTGTTGAAAGCACTTCCTGTTGAGCTCAAAAAGATGaggtaatgttttaaaatgtgccttaggttgtgtgttataaatgttCGGACTACAAGGCATCGCTGAGGTACGACAGCAACAAATTAAACAAGGTTTGTAAAGACTGTTACTTCATTCTGACTGGAAGAGTGGACTCTGAGGAGCCGGTCAGCGGGAAGAAAAGGGGAATTCTTGAGGTACGTCTTATTgatatttggttttgtttctgtctgcaatttttaaaaaaaaaaatttttataatctTGACCTTTAGAGGTGTAATGAGTACCTAAAAATCATACTTCAGTAAAAGTACAGATACATTACAAGCCACCAATTCTAAAACAGCTTGAGTACAAGTCTGATTTTAACAGTTCTTAAGTATTTCACTTAGACTTCATCAAAAGGTGACATGTGACTGCAACACTTATTACAAATGTAGTGGAGTAAAGAGTACAGTGCTTATGCAAAAATGTAGTAGAGAGTAAAACTTGCTAATATCTTTGACGCTATCATGTAAAGCCCCAGAGTATCCAAGACGATATTCAAGTGCTGTAATTAATGACCTTTACTCAAATACTTGACACCtctgcttgatttttttttctcttcttgaCCTTTATCAGATTGAAGCAGCTCAGGTCTCAGGAAACAGTTTTCTTTGTGGCTTTCTGCAGTACAGTACAGACCGAACAAAACCGTGTCAAAGGGTCTGGTGTGTAATTCCCCAGCACGACGCGCTCGTTCTTTACCTCTACGGCGCTCCACAGGATGTCAAAGCCCAGTGTACCATACCGCTTCTGGGTTACCAGGTTGAGGACGTCCAGCGCTCTGTGGATCATCCTCCCACCAGCTTCCGTCTGTGCCAGTCCAAATCTGTCCACTGCTTCACTGCCGACACGGAGGAAATGAAACTGCGCTGGCTAAAAGTGATCCGCAAAGCTGTGATCGGTGAGACGCCCGAATGCCAGACGCCGGTCGATGACCTCGCCAACGGTTGCCATGAAGGCACGCCTGATGGCACCTTAAAAGACAAGGCAGTTTTCTAGCTTTTGCATTATGCGTGTAACTCGGCGGAATAGAAATTGTTCATTAGGATGTGAAACCTTCCAGAACAGGTTGGATTTATTTGGGAGCGTATAAGTAGATATgcctttttaatgtattataatgtcAACCACAATcagacagtaaaaacattcagtgtgtgattatttaaatcaataactCAGTTTACGAAAGTTTGTTCGCAGACCAATCTCAGCAAAGTCTGAATAATGCTTTGCGATGTATTAGCCTTTCTCTTTGTGacgtttttaaatttgtatatgCTGTTTGTCGTTTTCAATGTCTCTAAGATTCATGCACTTTATTGCTTTTTGTAAAGTAGgccattaacattaaaatgaatgaataaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253188.1 lncRNA upstream 20872 22387599 ~ 22388615 (+) True LOC122363071
TU189419 lncRNA upstream 299029 22109473 ~ 22110458 (+) True G128329
TU189407 lncRNA upstream 340534 22033671 ~ 22068953 (+) True G128318
XR_006246944.1 lncRNA upstream 574466 21694446 ~ 21835021 (+) True LOC122323089
TU189310 lncRNA upstream 767858 21638410 ~ 21641629 (+) True G128251
TU189506 lncRNA downstream 122515 22534466 ~ 22535424 (+) True G128377
TU189508 lncRNA downstream 124824 22536775 ~ 22543533 (+) True G128379
XR_006253163.1 lncRNA downstream 126431 22538382 ~ 22539282 (+) False LOC122362809
TU189509 lncRNA downstream 127078 22539029 ~ 22539895 (+) True LOC122362809
TU189515 lncRNA downstream 138494 22550445 ~ 22551614 (+) True G128385
XM_043264964.1 mRNA upstream 10251 22374588 ~ 22399236 (+) True LOC122363070
XM_043264962.1 mRNA upstream 22435 22374588 ~ 22387052 (+) False LOC122363070
XM_043264963.1 mRNA upstream 22435 22374589 ~ 22387052 (+) False LOC122363070
XM_043264010.1 mRNA upstream 147518 22241472 ~ 22261969 (+) True LOC122362522
XM_043216571.1 mRNA upstream 383030 22016312 ~ 22026457 (+) True ttc38
XM_043264327.1 mRNA downstream 4831 22416782 ~ 22421246 (+) True LOC122362770
XM_043264382.1 mRNA downstream 40495 22452446 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264380.1 mRNA downstream 40496 22452447 ~ 22467259 (+) True si:ch211-260p9.3
XM_043264381.1 mRNA downstream 40496 22452447 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264383.1 mRNA downstream 40496 22452447 ~ 22467259 (+) False si:ch211-260p9.3
TU189467 other upstream 2505 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 1852860 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1860169 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2321906 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 2395701 20003004 ~ 20013786 (+) False wdr59
TU189495 other downstream 22855 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 1045149 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1312685 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2037814 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 2171894 24583845 ~ 24588045 (+) False LOC122323037

Expression Profile