RNA id: XM_043265105.1


Basic Information

Item Value
RNA id XM_043265105.1
length 2716
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC122363143
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22400944 ~ 22411957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTTGTCACTTTTCCTGCAGTGCCTCCTAAGCCAGCACACCTTCAGAGTCCGGTGACGGACATCTCCTTACCTCTGGCTGCTGGAACGTCACCCATCAGTCACAACATGGAGGGAGGAGGAGTAGGAGGAGGAATAGGGAAGGGCCTAGTGTCCAACCTCATCAGTCGCTTTGAGGAGAACAGTCACACAGACATTCGGAGGGAGGGCGCTCCTCTGAAGCAGGTCAGCAGATCTCCTAACTGCAGCCCGGCTCACAAAAACTACCAGAGACAGACGGAGAAGCCCACAGAGCCCGGCTCTCCTGTGAACAGCCCACGCCATGCTCTCAAACCCCCCAATGGGTTTCTAACCCAAAAGAAGAGAGAGCAGGACATGAATCAGGACATGGACGGAATTACGCACGACACAGTTCCAGCAATGAGGACCGACAGCAAGGGACTGCTGAACGGAGATGCCGGCGATGTAGCTAAGAGGGAAATTATAGACCAGGACTGTGTGGATCCACCTCACGCTCATATAGAACGGACCGAAGATGTGGAGAGGAACGCGCCGGAGCAGAGTGACGTTGTGATGAACAGCATCCCAGAGCAGAAGGAAACTAATGAGCAGAAGCTCTATAAGATAGCAAATGAACTTCTGCAGACAGAGAAGGCTTATGTTGCGCGACTCAACTTATTAGATAAGGTGTTTTATGCCAAGCTGTTAGAAGAAGCAAGAAAAGAAACGTTCCCCATGGATGTGGTGAAAAACATCTTCTCCAACATCTCTTCCATTAATACCTTCCACAGCCAGTTCCTCCTGCCTGACCTGGAAAAACGCATGGGAGAATGGTAAGACATTTTTCCTCAAACGTCGACACCTCGCATTGGGGACATCCTACAGAAGCTCACCCCCTTTCTGAAGATGTACGCTGAATATGTGAGGAACTTTGATCACGCCATGGATCTGCTGAAGCAATGGACGGACCGATCGCCTCCGTTTAAAGCCATCATTGTGGAAATCCAGAGTCAAGACGTGTGCGGAAGCCTGACGCTGCAGCACCACATGTTGGAGCCGGTTCAGAGAGTGCCGCGATACGAGATGCTGCTTAAAGACTATCTGAAGAAACTTCCTCAGGATCACATAGACCGGCGGGATGCTGAAAAGTCTTTAGAGATCATTGCCATGGCTGCCACTCATTCCAACACTGCCATTAGAAAAACAGAAAACCTAAAGAAATTGCTGGAGATTTACGAGATGCTGGGGGAGGAAGAGGACATTGTGAACCCTTCAAACGAGTTAATAAAAGAGGGTCATATTCTGAAGCTGGCCGCTAGAAACACTTCAGCCATGGACAGATATCTCTTCCTATTCAACAACATGCTGCTGTACTGCGTTCCAAAGTTCAGCTTGGTGGGACAGAAGTTTACGGTTCGCACACGTATCGGCATCGACGGCATGAATGTGACGGAGACGTACAACGATGATTATCCTCACACCTTTCAGGTTTCAGGGAAGGAACGGACACTGGAGCTGCAGGCCAGCTCTGAACAGGATAAAGTAAGCTGGATtaagGCGTTCCAGCAGACCATTGAAATCTTTCAGCAGAAGAACGAAACATTCAAATCAGCCTCTAAAGAAGTGGCGGATGAGGTTTCTAAAGAGGAGCTGGGGAAGAGAGCCCCGCGCTGGATTCGGGACAATGAAGTGACCATGTGCATGAAATGCAAGGAGCCCTTCAACCCTCTGACCCGCAGGAGACATCACTGCAGGGCATGCGGATATgttgtgtgttataaatgttCGGACTACAAGGCATCGCTGAGGTACGACAGCAACAAATTAAACAAGGTTTGTAAAGACTGTTACTTCATTCTGACTGGAAGAGTGGACTCTGAGGAGCCGGTCAGCGGGAAGAAAAGGGGAATTCTTGAGATTGAAGCAGCTCAGGTCTCAGGAAACAGTTTTCTTTGTGGCTTTCTGCAGTACAGTACAGACCGAACAAAACCGTGTCAAAGGGTCTGGTGTGTAATTCCCCAGCACGACGCGCTCGTTCTTTACCTCTACGGCGCTCCACAGGATGTCAAAGCCCAGTGTACCATACCGCTTCTGGGTTACCAGGTTGAGGACGTCCAGCGCTCTGTGGATCATCCTCCCACCAGCTTCCGTCTGTGCCAGTCCAAATCTGTCCACTGCTTCACTGCCGACACGGAGGAAATGAAACTGCGCTGGCTAAAAGTGATCCGCAAAGCTGTGATCGGTGAGACGCCCGAATGCCAGACGCCGGTCGATGACCTCGCCAACGGTTGCCATGAAGGCACGCCTGATGGCACCTTAAAAGACAAGGCAGTTTTCTAGCTTTTGCATTATGCGTGTAACTCGGCGGAATAGAAATTGTTCATTAGGATGTGAAACCTTCCAGAACAGGTTGGATTTATTTGGGAGCGTATAAGTAGATATgcctttttaatgtattataatgtcAACCACAATcagacagtaaaaacattcagtgtgtgattatttaaatcaataactCAGTTTACGAAAGTTTGTTCGCAGACCAATCTCAGCAAAGTCTGAATAATGCTTTGCGATGTATTAGCCTTTCTCTTTGTGacgtttttaaatttgtatatgCTGTTTGTCGTTTTCAATGTCTCTAAGATTCATGCACTTTATTGCTTTTTGTAAAGTAGgccattaacattaaaatgaatgaataagaaCTGAA

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253188.1 lncRNA upstream 12329 22387599 ~ 22388615 (+) True LOC122363071
TU189419 lncRNA upstream 290486 22109473 ~ 22110458 (+) True G128329
TU189407 lncRNA upstream 331991 22033671 ~ 22068953 (+) True G128318
XR_006246944.1 lncRNA upstream 565923 21694446 ~ 21835021 (+) True LOC122323089
TU189310 lncRNA upstream 759315 21638410 ~ 21641629 (+) True G128251
TU189506 lncRNA downstream 122509 22534466 ~ 22535424 (+) True G128377
TU189508 lncRNA downstream 124818 22536775 ~ 22543533 (+) True G128379
XR_006253163.1 lncRNA downstream 126425 22538382 ~ 22539282 (+) False LOC122362809
TU189509 lncRNA downstream 127072 22539029 ~ 22539895 (+) True LOC122362809
TU189515 lncRNA downstream 138488 22550445 ~ 22551614 (+) True G128385
XM_043264964.1 mRNA upstream 1708 22374588 ~ 22399236 (+) True LOC122363070
XM_043264962.1 mRNA upstream 13892 22374588 ~ 22387052 (+) False LOC122363070
XM_043264963.1 mRNA upstream 13892 22374589 ~ 22387052 (+) False LOC122363070
XM_043264010.1 mRNA upstream 138975 22241472 ~ 22261969 (+) True LOC122362522
XM_043216571.1 mRNA upstream 374487 22016312 ~ 22026457 (+) True ttc38
XM_043264327.1 mRNA downstream 4825 22416782 ~ 22421246 (+) True LOC122362770
XM_043264382.1 mRNA downstream 40489 22452446 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264380.1 mRNA downstream 40490 22452447 ~ 22467259 (+) True si:ch211-260p9.3
XM_043264381.1 mRNA downstream 40490 22452447 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264383.1 mRNA downstream 40490 22452447 ~ 22467259 (+) False si:ch211-260p9.3
XR_006246928.1 other upstream 1844317 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1851626 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2313363 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 2387158 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 3618785 18777768 ~ 18782159 (+) True G127500
TU189495 other downstream 22849 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 1045143 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1312679 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2037808 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 2171888 24583845 ~ 24588045 (+) False LOC122323037

Expression Profile