RNA id: TU189495



Basic Information


Item Value
RNA id TU189495
length 750
RNA type TUCP
GC content 0.45
exon number 3
gene id G128367
representative True

Chromosome Information


Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22434806 ~ 22438679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCAACATGCGACATGGATCAACCTGAAGTCTCCTCACTGAAATAAACGCGTTTCCCGCATTAAGATGTCGCGGTTTTGGTATAATTCACGTTTGCAGCAGGGCGCAAAAGTCTGACAGGGTAGTGCGCGCATCGCTCTCTCATCCCTGGGGATTTTGCATAGATAATTTTGCTtccggattttttttttttaattctcttaaCGTTCTCTTCACTTCCTTGTGTTTAGCGAATAGAGGAACTGACCACATTGTGACTAGACTGAtcatagattttattttatttaataattttttttaaaaaaagtactgcaTTGGGTTGTTTTTCCACGTTTAAATATGAGAATTAGTTTGGTTACAGCAGGTGTTTTTCGACGTGGTCATTGATTTTCTTCTCTAAACTTggTGTGCGACCGAAGGCAGCGATGGCGGGCCGTGTACAGCAGGGAGACCTGACCGAGTACAAGAAGAATCTCATTAAGCGCGACCTCGAGATGGGGATAGTGATGACCGTGTTCAGACAGAGGATGGAGAGGCTTACCGTGCAGGTCATCATGGAGACGCGACAGGTGGCCTGGTCGCGCACCGCCAACAAGACAGAaggagtgtTGGACCTTTTGAGATCCGGGAAGCACGTGCAGGAAAAAACTCCAAAGACTTTGATCGATTGAAGGACAGCAAGGATAAAACTATAGACCCCAACTCATGCTTCACTATATTCTATGGCTCTCAGTTCGTTCTCAACACTCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU189448 lncRNA upstream 22855 22409487 ~ 22411951 (+) False LOC122363143
XR_006253188.1 lncRNA upstream 46191 22387599 ~ 22388615 (+) True LOC122363071
TU189419 lncRNA upstream 324348 22109473 ~ 22110458 (+) True G128329
TU189407 lncRNA upstream 365853 22033671 ~ 22068953 (+) True G128318
XR_006246944.1 lncRNA upstream 599785 21694446 ~ 21835021 (+) True LOC122323089
TU189506 lncRNA downstream 95787 22534466 ~ 22535424 (+) True G128377
TU189508 lncRNA downstream 98096 22536775 ~ 22543533 (+) True G128379
XR_006253163.1 lncRNA downstream 99703 22538382 ~ 22539282 (+) False LOC122362809
TU189509 lncRNA downstream 100350 22539029 ~ 22539895 (+) True LOC122362809
TU189515 lncRNA downstream 111766 22550445 ~ 22551614 (+) True G128385
XM_043264327.1 mRNA upstream 13560 22416782 ~ 22421246 (+) True LOC122362770
XM_043265105.1 mRNA upstream 22849 22400944 ~ 22411957 (+) False LOC122363143
XM_043264964.1 mRNA upstream 35570 22374588 ~ 22399236 (+) True LOC122363070
XM_043264962.1 mRNA upstream 47754 22374588 ~ 22387052 (+) False LOC122363070
XM_043264963.1 mRNA upstream 47754 22374589 ~ 22387052 (+) False LOC122363070
XM_043264382.1 mRNA downstream 13767 22452446 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264380.1 mRNA downstream 13768 22452447 ~ 22467259 (+) True si:ch211-260p9.3
XM_043264381.1 mRNA downstream 13768 22452447 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264383.1 mRNA downstream 13768 22452447 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264386.1 mRNA downstream 14012 22452691 ~ 22467259 (+) False si:ch211-260p9.3
TU189467 other upstream 27824 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 1878179 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1885488 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2347225 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 2421020 20003004 ~ 20013786 (+) False wdr59
TU189951 other downstream 1018421 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1285957 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2011086 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 2145166 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 2557092 24995771 ~ 24995950 (+) True LOC122323238

Expression Profile