RNA id: TU189509


Basic Information

Item Value
RNA id TU189509
length 433
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC122362809
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22538382 ~ 22539895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGCTTCCACTGAGTACAGTGTCCTGACATGCctgtaatgtttaatattgctatagtttgtaaaattatctttatttgtttagtgcTTTATGGAATAGATtgtcaaatctttatttttattaaagcagacaCATCAAATGATGGCTGAAGTgaaaaggagaaggagaaaacTGAAGCCAGTTGATGAGGCCATACAGTTCTCACTACTACAGAAAGACAAATCTGGTCTTGAAGGAAGATTCATCAATGATTTTAAAGGcaaAGGTGTGTTTGAGAAAGGAGATTTCCTGCTGGAATATAGAGGGACCTCATAGATAAAGAAGAAATGAACGGAGGCAAAGGATATATCATGATGCACTTAAAGTTTACATCTTTGAGTTTCGCTATAATGGAAAGCTTCTCTGCATTGACGCAGCCCGGGATGATGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189506 lncRNA upstream 3605 22534466 ~ 22535424 (+) True G128377
TU189448 lncRNA upstream 127078 22409487 ~ 22411951 (+) False LOC122363143
XR_006253188.1 lncRNA upstream 150414 22387599 ~ 22388615 (+) True LOC122363071
TU189419 lncRNA upstream 428571 22109473 ~ 22110458 (+) True G128329
TU189407 lncRNA upstream 470076 22033671 ~ 22068953 (+) True G128318
TU189515 lncRNA downstream 10550 22550445 ~ 22551614 (+) True G128385
XR_006253164.1 lncRNA downstream 20496 22560391 ~ 22563204 (+) True LOC122362810
TU189576 lncRNA downstream 401687 22941582 ~ 22944126 (+) True G128431
TU189596 lncRNA downstream 454203 22994098 ~ 22994341 (+) True G128451
TU189598 lncRNA downstream 455856 22995751 ~ 22996031 (+) True G128453
XM_043264389.1 mRNA upstream 14857 22498257 ~ 22524172 (+) True LOC122362804
XM_043264387.1 mRNA upstream 71770 22452696 ~ 22467259 (+) False si:ch211-260p9.3
XM_043264390.1 mRNA downstream 44022 22583917 ~ 22622188 (+) True LOC122362807
XM_043264819.1 mRNA downstream 83229 22623124 ~ 22636865 (+) True LOC122362983
XM_043216753.1 mRNA downstream 128302 22668197 ~ 22762542 (+) True tmtc2b
XM_043265061.1 mRNA downstream 277462 22817357 ~ 22849043 (+) True bicd1a
XM_043265063.1 mRNA downstream 277462 22817357 ~ 22849043 (+) False bicd1a
TU189495 other upstream 100350 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 132047 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 1982402 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1989711 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2451448 20086695 ~ 20087581 (+) False zfhx3a
TU189951 other downstream 917205 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1184741 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 1909870 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 2043950 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 2455876 24995771 ~ 24995950 (+) True LOC122323238

Expression Profile