RNA id: TU189600



Basic Information


Item Value
RNA id TU189600
length 313
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G128454
representative True

Chromosome Information


Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22997764 ~ 23001633 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gtttacaacagaaaaaagcattctgacataaaaataaatgctagtCCTCTTTAGCGGCGACGGCATGGTATTTTCTCACCTCCAGTTGGCCAGAGGCTGCGAGCTGGTCATGGAGTCGGGGATGACGGTGGCGTGTTGaatggaggtgtgtgtgagctgcTGCCAAGCCGGCGGAAGGAGAATCTGTTGAGTACCAGACGGCCAGGCCTGCTGTCAGAAGGCCCGGCTGTATCTGTAGAGGTTGGGCACCGGGGGCCTGTGTTACTATGGGAACTGCATTCTCCATCCGTACTGAGTAGCCAGTGTGTTTGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU189598 lncRNA upstream 1733 22995751 ~ 22996031 (+) True G128453
TU189596 lncRNA upstream 3423 22994098 ~ 22994341 (+) True G128451
TU189576 lncRNA upstream 53638 22941582 ~ 22944126 (+) True G128431
XR_006253164.1 lncRNA upstream 434560 22560391 ~ 22563204 (+) True LOC122362810
TU189515 lncRNA upstream 446150 22550445 ~ 22551614 (+) True G128385
TU189604 lncRNA downstream 802 23002435 ~ 23002655 (+) True G128458
TU189605 lncRNA downstream 2036 23003669 ~ 23004127 (+) True G128459
TU189608 lncRNA downstream 4325 23005958 ~ 23006443 (+) True G128462
TU189613 lncRNA downstream 51769 23053402 ~ 23054529 (+) True G128467
TU189615 lncRNA downstream 55387 23057020 ~ 23057222 (+) True G128469
XM_043263894.1 mRNA upstream 108264 22854504 ~ 22889500 (+) False fgd4a
XM_043264245.1 mRNA downstream 79394 23081027 ~ 23140905 (+) False tbxas1
XM_043264246.1 mRNA downstream 79451 23081084 ~ 23140905 (+) True tbxas1
XM_043216705.1 mRNA downstream 239840 23241473 ~ 23242712 (+) True LOC122323065
XM_043263982.1 mRNA downstream 242904 23244537 ~ 23250136 (+) True LOC122362508
XM_043264185.1 mRNA downstream 249242 23250875 ~ 23258449 (+) True tat
TU189495 other upstream 559085 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 590782 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 2441137 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 2448446 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2910183 20086695 ~ 20087581 (+) False zfhx3a
TU189951 other downstream 455467 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 723003 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 1448132 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 1582212 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 1994138 24995771 ~ 24995950 (+) True LOC122323238

Expression Profile