RNA id: TU189613



Basic Information


Item Value
RNA id TU189613
length 1128
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G128467
representative True

Chromosome Information


Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23053402 ~ 23054529 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGGACTGCAGGTAGGTAGAGCACACCGCTTTGGAGACGTGACTAGCAGAGCCGAAGTCGATGACCTTGACCCTGTACGGTTGGCGGGCTGGGTCTACAAGCATGATGTTCTCAGGTTTCAAGTCAGCGTGGATCAGTCCGAGGCTTTTGAGCTTCATGAGGGCAGTGGCCACCTGCTGCAGGATGGGTCGGATGTACTTGAGTGGCAACGGGCTGAACTTGTTCTGCTTGAGGAAGTCGTACAGGTTCTGCTCCAACATCTCGAAGACCAGGCACGTGTGGTTCTTGTGCTGGAAGCACTCGTACGCTCGAACAAAGTTGTAGTCGTCGGCGCTCTCCGTGCTCAGCCGCGCCAGTATGCTCACCTCAATCTGGCCCTGCCGCGCATACGAAGGGTGGTTCTTGAGGATCTTGATGGCCACGATCTCGCTGGTGCCGCGTTTCCAGCACTTCACCACCTGCCCGAACGTCCCTCGACCTAGGAACTCCAGCACCTCGTAGGTGTTTGTCATGGAGCAAAGCACCTCGTGCTGCAAGAGCTGGTAGTCACCCTCGCTGTTGGCGCCGCTGTTCTTGGACGTGGCCGTGGTGGAGGCGGTCGCAGTCGCGACGGTGGCCCCACTCTGTGCGTTGTTCTGGATCATGGGTGCAGGCAGTTGCTGCTCCTCGACCACGTGCACACTGCTTCCACTGCCGTTGTTGTTGTCCAGCTCCTCGCTTTTCCGCTTAAGCCCGCATCGCTGGTACGTGTCCAGCAGACTGACGGTGCTGCGGCGCGTCAGGTTGTGACCTCCGCTGCCGCTTCCGCTGCTCCCGGTGCTGCCCAACAGTTGACCAGCCGCCCCTGACGTGCTGCTGGCCGAGGCCACTACGATGTGCCCCGAACCGGCCGGGAAGAGGAGGGCCTGTTCGTAGGACAGGGAAGAGTTGGAGACCTGGAGGCTGGCGCCGTTGATGCCCACTGGGGCGACTGAGACACTCTGCTTGCTGTTCTGACTGTAGACCTTGCTGTGCGTGCCGTACCCTGTCATATCCCAGTTGCAACTCTGCTCCACCTTCAGTTTCTTCACGCTAAAGAAGGCACTTGACTGGAGAGTGTGAGGGGAGAAGACTTGCACTTGCGAGGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU189608 lncRNA upstream 46959 23005958 ~ 23006443 (+) True G128462
TU189605 lncRNA upstream 49275 23003669 ~ 23004127 (+) True G128459
TU189604 lncRNA upstream 50747 23002435 ~ 23002655 (+) True G128458
TU189600 lncRNA upstream 51769 22997764 ~ 23001633 (+) True G128454
TU189598 lncRNA upstream 57371 22995751 ~ 22996031 (+) True G128453
TU189615 lncRNA downstream 2491 23057020 ~ 23057222 (+) True G128469
TU189616 lncRNA downstream 2858 23057387 ~ 23059941 (+) True G128470
TU189621 lncRNA downstream 12283 23066812 ~ 23067068 (+) True G128475
TU189624 lncRNA downstream 13781 23068310 ~ 23080310 (+) True G128476
TU189930 lncRNA downstream 281262 23335791 ~ 23337089 (+) True G128696
XM_043263894.1 mRNA upstream 163902 22854504 ~ 22889500 (+) False fgd4a
XM_043264245.1 mRNA downstream 26498 23081027 ~ 23140905 (+) False tbxas1
XM_043264246.1 mRNA downstream 26555 23081084 ~ 23140905 (+) True tbxas1
XM_043216705.1 mRNA downstream 186944 23241473 ~ 23242712 (+) True LOC122323065
XM_043263982.1 mRNA downstream 190008 23244537 ~ 23250136 (+) True LOC122362508
XM_043264185.1 mRNA downstream 196346 23250875 ~ 23258449 (+) True tat
TU189495 other upstream 614723 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 646420 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 2496775 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 2504084 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 2965821 20086695 ~ 20087581 (+) False zfhx3a
TU189951 other downstream 402571 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 670107 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 1395236 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 1529316 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 1941242 24995771 ~ 24995950 (+) True LOC122323238

Expression Profile