RNA id: XM_043216624.1


Basic Information

Item Value
RNA id XM_043216624.1
length 3344
RNA type mRNA
GC content 0.47
exon number 16
gene id cdh13
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23457100 ~ 23736848 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCTGGTTGGGAAGATGAAGGTGGCTTCAGTGCTGGAGAAAGCGTCGCTGATATGGATGCAGGAGGTTGTATGCACTGGAGcgcaggaagaggaagagaaggcTGAATGTGTACCGGGATTTCAGGAGAAGGAGTACCAGGTGGAGTACAGTGGAGGGTTCCTCAAAGACGTTCCTCTGCTGCAAGTGGTTTTCGATGACTGCGCTGGAAATGAGGGTCTGGAGTTTGAAGTATCGAACCCTAACTTTCTAATAGACGAGAATCTGAATCTGGTTCCCAGAAGAGACGTGATTGACAGTGGAGATGTCATGTTTATCCACGGTGTCAACGTTCATGTTGATGACATGGCAGAGGTGACCATTTTGGGAGCACCATCTAGATCTCCTCAGACACTCAGGGAGATCCTCGGCCTATCAGACATGATGCCGTACCGATCCAAAAGGTCCCTGCTGGTGCCCCCCATGTTTGTCCCAGAGAACCAGCGAGCCCCCTTCCCCAGGTTAATTGGAAAGTCGCATGTGATCTCATCTGACATGAAGGAAGACCACATCTTCCGTCTGACGGGAAGGGGAGCAGATCAAGACCCTAAGGGTGTGTTCAGCATCAACCGACTGACGGGAGAGGTGGCAGTCAGCAGAGCTCTGGATCGAGAGGCCATTGCGTACTACCATCTCCAGGTATCCACCACTGACCTAAGTGGCAGATTGGTAGAGGGACCAGTAGACCTGGACGTGTCTGTTATTGACCAGAATGACAACCGTCCGGTGTTCAAGGAGCCGCGTTACTCTGGGGAGGTTCTGGAGGGCTCCCCCACAGGCACTACAGTGATGACCATGACGGCTTACGACGCGGACGATACCAACACGGACAACGCTGTACTACGCTACATCATTGTGAGACAGCTGCCCGATAAACCTTCGCCCAATATGTTCTACATCGACCCGGAGAGCGACATTGTCACTGTGATAGCACCCCATCAGCTCGATAGAGAGACTCTTCCAACCACGCAGTACGAGCTAGAAATTGTGGCGAAGGACATGGCGGGAAGTGAGGTGGGACTGACAGGAACTGCAACAGCAACcatcaccatcacagacaggaACGACCACGCACCTGAGTTTACACACTCACTGTTTCAGGCATCAGTAAATGAGGGATCAACTGGGGTGGTTGTTAACCTGACAGTGGACGACAGAGACGACCCTGCCACTGGAGCCTGGAGAGCTATCTACTCTATCATCAATGGAGATCCCAACCAGAACTTTGAGATACAGACCAACCTGGACAACAATGAAGGGATGCTGTCAGTAATAAAGcCTCTGGACTATGAAAGTTCAATGTTTAACACACTGCTAATAAAAGTGGAAAACGAAGACCCTCTGGTTCCTGATGTTGTGTATGGCCCCAGCTCTACAGCGACGGTTTACATTACAGTTATGGATGTGAATGAAGGACCTGTGTTCTTCCCAGATCCTCTGGTTGTCATCAGAAGAGAAAATATTCCCATAGGGAGCTTTGTGGCCATGCTGAATGCTACTGATCCGGACTACCTACAGACGCAGAGCATAAGGTTCACTGTATTGAGAGACCCAGCAGACTGGCTGATCGTGAACCCCTTCAAAGGCAATGTCACCACCAGGGCGATACTGGACCGCGAGTCTCCACACGTTCACAACAACCAGTACACTGCTCTCTTCATGGCCACAGATAACGGAAGTCCACCCGCTTCAGGCACGGGTACGCTGATAATCACTCTGGAGGACGAGAACGACAACGCTCCCTACGTCTTCCCCTCCGTGGCCCGCGTGTGTGAGGACGCTAAAGACATGAATGTGGTGGTGATCGGGGGACGAGACAAGGACATTCATCCTAATACGGATCCTTTCAAGATCGAACTTGGCAAGCAGCCAGGACTGGAGAAAACATGGAAAATCTCCAGGATCAATGACACTCACTCCCAGATTATGTTGCTGCACAGTCTGAAAAAGGCTAACTACAACCTGCCGCTGGTTCTGACCGACTCTGGCGTGCCTCCAATATCTAACAACACAGAACTGAAAGTTCAAGTGTGCACCTGTAAGAAGAACAGAATGGACTGCAGCCGTGCTGGCTCCATCCAAACAAACCTCTTGCTACTGCTCGGCCTGGTTCTGCTCTCCATCCTCTgcTTGTAAATTCCGCCGATTCTTTCTGTAGTCCTTTTGCAACACTGAAGAAAACCTTCTTCTCTTCTCCACACGCAAACCAGGCCCAGAGAGAAGACTCCCGCCCCCTCCCCAAAAAGACACTTTGCGCCCTTCATTTTTGCTCTCCTCCTTTTCACCATCGTCTCTCTCCATCCCCAACCGGTGCATCTTCACCCTTTTCACCAGGAACTCTCCTTCTCTCCtctccctgcacttcctgtcttCTCATACCTCTGGAATACATCACGGACAGCACCGCCTCAATGCTCGAACTCTCTCTCACTGGACAAAGATATATTGGATGGGGGCAAAGCGATTGGACATTTCGATGTACTTTAGTTTCCTCTGGTTAAAGACTACTGTATTTGATCTTGTTTACTAATGTAAGGGAAGGACACAAGGCCTCTTTAGTCTGCAGTGGTTGTGTTTTCTTAGGGCAGGGTGGTAGCCAGAAGCCTTCAGagtctaaaaaaaaagcatctcttgcgtctttttattttgtttttttggttcagTTGCATTAGTTGTTATGGAGTGGAACACAATATATCTTTATAGTAATGTGTGAAATGGTGGGGGGAAAtgtacactatatatattttattttttaccaatgtacaaatatattaattaacttATGTACTTTGATCACATATTCTTTAAAGACCCCtcacgagaaaaaaaaaaaacaactgtatgtttttgctaaattttaGGGACTATTTCTAATGccattgatgttttttttcttctttttttttctctccatgtACGAGCTCTCGTTTAGAGTGTGGTTCTTGAGTCTGGAGAGCGATTTGCAGACAGAGAGCAAATCTGTCTTGTGATTCTTGTTTCTGATGGTATggcgtttattttatttttctccctcTCCCCTTGGGTCAGAGTCAAAGAGGCCAGGGAAGGCTATTGATTCagtggttctttttttttttttttttttttgcgcttgTGAGAAGAAGACAACAAAAAAGGGAGACAGAAAAAGATAATAGacgaaaaacaaaataaaatgtgtgtgtggctttGTGTGGAAGACCCCGTAAGTTctgaaaatgcaaagaaaaagatGACGTGGTGAATGAGTTTTGTCTGTCTTTTGCACTAATTTAATAAAGCTGTTACTGTACTTCCCACCA

Function

GO: NA

KEGG:

id description
K06808 CDH13; cadherin 13, H-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189935 lncRNA upstream 114517 23358451 ~ 23359557 (+) True G128699
TU189930 lncRNA upstream 136985 23335791 ~ 23337089 (+) True G128696
TU189624 lncRNA upstream 393764 23068310 ~ 23080310 (+) True G128476
TU189621 lncRNA upstream 407006 23066812 ~ 23067068 (+) True G128475
TU189616 lncRNA upstream 414133 23057387 ~ 23059941 (+) True G128470
TU189981 lncRNA downstream 48176 23785024 ~ 23787163 (+) True G128725
TU190019 lncRNA downstream 291641 24028489 ~ 24029817 (+) True G128753
TU190041 lncRNA downstream 319872 24056720 ~ 24063271 (+) True G128770
TU190043 lncRNA downstream 321505 24058353 ~ 24066103 (+) True G128772
TU190086 lncRNA downstream 560261 24297109 ~ 24297333 (+) True G128803
XM_043264329.1 mRNA upstream 168736 23289516 ~ 23305338 (+) True plcg2
XM_043216857.1 mRNA upstream 186011 23283862 ~ 23288063 (+) True meak7
XM_043264187.1 mRNA upstream 197604 23271267 ~ 23276470 (+) True cotl1
XM_043264186.1 mRNA upstream 207949 23262358 ~ 23266125 (+) True zgc:56622
XM_043264185.1 mRNA upstream 215625 23250875 ~ 23258449 (+) True tat
XM_043264127.1 mRNA downstream 52545 23789393 ~ 23814740 (+) True zgc:173742
XM_043264172.1 mRNA downstream 81205 23818053 ~ 23853275 (+) False si:dkey-246g23.2
XM_043264176.1 mRNA downstream 81205 23818053 ~ 23852960 (+) False si:dkey-246g23.2
XM_043264174.1 mRNA downstream 81477 23818325 ~ 23853275 (+) False si:dkey-246g23.2
XM_043264175.1 mRNA downstream 83532 23820380 ~ 23853275 (+) True si:dkey-246g23.2
TU189495 other upstream 1035395 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 1067092 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 2917447 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 2924756 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 3386493 20086695 ~ 20087581 (+) False zfhx3a
TU190171 other downstream 712917 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 846997 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 1258923 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 1557895 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 1557895 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile