RNA id: TU190019



Basic Information


Item Value
RNA id TU190019
length 822
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G128753
representative True

Chromosome Information


Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24028489 ~ 24029817 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTTTTAATCCTATCTTCTTTTGTaaacctaaattaaaaatatacaacaaacATGTAATCAACGAAAAACATGCTTATTGTACATCATTTtcttttgcataaaaacatgatttttatggattttttgtGACTGTGGCCAggttaaaaaattgttttaaaaggtaaaattaaTACTCTTGCatatactgaaatatttggCTTTGTGCTTGAAGAGAGTTTTTTCTATTCCaggattaaatgtaaaatatacaaacatacaaatatttatactgTGGTATTTCAGtgaaattaattatgatatGTCAGCATTAATGCTGAATGATGTAGGCCTGCTAATAGTTCAGTTGTGCCAGAAATTAGCACACAACGGGCTGATAAGCTAAAACTAAACAGTACACTCACAAAAATAGTTCAAAGTCTGTATGTGACATggtacaaataaaatgtaaagactTGATGATGTCTCAGAGAGCCGTCTCTTTAGATTCTGCCACGGCTGGTGCTGGATGGAAGGTCAGAATTTCACTGAAGGTGAGTTCTTTTCCACTGCTCCACTGACTGCTCTGCCTCATCCAGAGAATGATCGTACGGTGGGGCCTCGGTCTCCTCGTCTGGTTCACGAAACTCAGAGAAGAAAGGAAGAGCCAGACCCTGTGCCGCTGTTATTCTACTGTCAGGATCCAGGAGCAGCATGCTGTCTAACACATTAATCGCTAAAAAGGAAATCAGCACAGAATCGGTGACCTGCATTCATGAAAGATGCACTTGGATCAAATAGGAAGTAAACTCTTCAAGGTTCACGGGTTCCCAAAGAATGCttgaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU189981 lncRNA upstream 241326 23785024 ~ 23787163 (+) True G128725
TU189935 lncRNA upstream 668932 23358451 ~ 23359557 (+) True G128699
TU189930 lncRNA upstream 691400 23335791 ~ 23337089 (+) True G128696
TU189624 lncRNA upstream 948179 23068310 ~ 23080310 (+) True G128476
TU189621 lncRNA upstream 961421 23066812 ~ 23067068 (+) True G128475
TU190041 lncRNA downstream 26903 24056720 ~ 24063271 (+) True G128770
TU190043 lncRNA downstream 28536 24058353 ~ 24066103 (+) True G128772
TU190086 lncRNA downstream 267292 24297109 ~ 24297333 (+) True G128803
TU190087 lncRNA downstream 267792 24297609 ~ 24297845 (+) True G128804
TU190109 lncRNA downstream 315383 24345200 ~ 24382712 (+) False G128816
XM_043265046.1 mRNA upstream 58430 23963028 ~ 23970059 (+) True uri1
XM_043263939.1 mRNA upstream 67466 23958161 ~ 23961023 (+) False spata2l
XM_043263938.1 mRNA upstream 67466 23958510 ~ 23961023 (+) True spata2l
XM_043265074.1 mRNA upstream 76278 23937000 ~ 23952211 (+) True vps9d1
XM_043265075.1 mRNA upstream 76278 23937000 ~ 23952211 (+) False vps9d1
XM_043264330.1 mRNA downstream 104596 24134413 ~ 24181542 (+) True LOC122362775
XM_043264087.1 mRNA downstream 247465 24277282 ~ 24286775 (+) True cry1b
XM_043264094.1 mRNA downstream 257321 24287138 ~ 24291459 (+) True zgc:153031
XM_043216488.1 mRNA downstream 278359 24308176 ~ 24314980 (+) True si:ch73-62b13.1
XM_043264268.1 mRNA downstream 309074 24338891 ~ 24350157 (+) True si:dkey-103i16.6
TU189952 other upstream 291643 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 448687 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 1589810 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 1621507 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 3471862 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU190171 other downstream 419948 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 554028 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 965954 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 1264926 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 1264926 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile