RNA id: TU190043


Basic Information

Item Value
RNA id TU190043
length 1415
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G128772
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24058353 ~ 24066103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatattttgctgtatttaccGTATATAAGTCATAGACTGTACTTGGTCTAAAACATGAGCAAACATTTCACATAAACAAGCTTTAGGATTTTATTGATCTAcaataatgtaacaaaatgcatatatttatacaaaaataaaatctaacaaagTAAAAATGCTTGCATGCAGCAAGGCACTGAACAGTAATATGGTCCATTAAAGTGTGTTAGATTTATTGAAAGCATCATAAATTAGGTCCCCTACTCTTCCAGCTTCTGACATGTGGGCTTTCTAGATAATGCATTACAAGTGCTGTAGATTGTACATGCATGGTGTGTACACCGTTTATTTGCATATCAATTTGCTCAGCCATTCGCTCATCACAAATGATTCTAATTTCATCTGGTATGGTAGGCTATATTCATGATTGCGGCACAAGGATCTTTACAAAAGACTTTCCAAACCAACCACACATTTTGGCTTGTTTGTGCTTTTCTTTACCAAATTGTCATTCAGTAATATCTCTGACAGGCATACACTTTAACGTTCAAAAATCTGGGGTCAGTatgacttaaaatatttttgaaagaactcTCATGCTCagcaaagttgcatttatttgatttaaaagacagtaaaaagtgcaatattacgaatatatgaatattatgttattacagtttaaaataacagttttctatttcactatattttaacatttaatttttcctgTAACGATTtaagcttaattttcagcatcattagcCAAGTCTTTAGTATCATGTGATCCTTTAGAAAGTGTTCTAATCATTATGTTCTGATTTACGACTCAAGATGCCATTActgatgctgcttttttttaaaaatactgctttttttgtaaagctTTCATAGAAAGCTTTCATTTGTAACGGTTTTGTAACAACGCGAtgtttcacttttgatcaatttagtgCATGTTTgccatatttatatatcttaaCCCCAAAATTTTGAACGGTAGTGAACTGTTCATTAATATGACAGGTCAGCTGACAACTATGACAAAAGGGTTCATGGTGATTCTTTCCAACTGATGTTATCATACTCCATATTTGTaactttctctctgtttttccttCTGATGGCTGTATCTTTGGTCACTGTGCCATTTGGACCACCACTGCTTTCCAAGCCTTCTCTCTATCAAAGTCCCTTAGCGTGCCGTTTAACGTTTGTTGCTGTAAGAAAAGAATGAGATGGTAGAAAAGAAATGACCCAATAGTGACCTTGAGGTCTCTCTATGTTAATCACGACATCCTCCATGTACGTTATGATGAAATCATCGAGGCGGATCAGCTCTGCCATTCCACTGTGACTGTCTTTCATGCTACATTTGGCACTGTACAGTGCAGTTTTTCATTTAGTAGTCTCTCACGGCTAACATCTTGCGC

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190019 lncRNA upstream 28536 24028489 ~ 24029817 (+) True G128753
TU189981 lncRNA upstream 271190 23785024 ~ 23787163 (+) True G128725
TU189935 lncRNA upstream 698796 23358451 ~ 23359557 (+) True G128699
TU189930 lncRNA upstream 721264 23335791 ~ 23337089 (+) True G128696
TU189624 lncRNA upstream 978043 23068310 ~ 23080310 (+) True G128476
TU190086 lncRNA downstream 231006 24297109 ~ 24297333 (+) True G128803
TU190087 lncRNA downstream 231506 24297609 ~ 24297845 (+) True G128804
TU190109 lncRNA downstream 279097 24345200 ~ 24382712 (+) False G128816
TU190110 lncRNA downstream 295195 24361298 ~ 24382712 (+) False G128816
TU190108 lncRNA downstream 316037 24382140 ~ 24382712 (+) True G128816
XM_043265046.1 mRNA upstream 88294 23963028 ~ 23970059 (+) True uri1
XM_043263939.1 mRNA upstream 97330 23958161 ~ 23961023 (+) False spata2l
XM_043263938.1 mRNA upstream 97330 23958510 ~ 23961023 (+) True spata2l
XM_043265074.1 mRNA upstream 106142 23937000 ~ 23952211 (+) True vps9d1
XM_043264330.1 mRNA downstream 68310 24134413 ~ 24181542 (+) True LOC122362775
XM_043264087.1 mRNA downstream 211179 24277282 ~ 24286775 (+) True cry1b
XM_043264094.1 mRNA downstream 221035 24287138 ~ 24291459 (+) True zgc:153031
XM_043216488.1 mRNA downstream 242073 24308176 ~ 24314980 (+) True si:ch73-62b13.1
XM_043264268.1 mRNA downstream 272788 24338891 ~ 24350157 (+) True si:dkey-103i16.6
TU189952 other upstream 321507 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 478551 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 1619674 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 1651371 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 3501726 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU190171 other downstream 383662 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 517742 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 929668 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 1228640 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 1228640 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile