RNA id: TU190152


Basic Information

Item Value
RNA id TU190152
length 4495
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G128841
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24436038 ~ 24440532 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATTTATTTGTTGACGCATGACAGACCAACACAGGTGTACAGGAAactaatgttgtttatttaagaaTCTTTTTACATGTCAGCCTGGAGAGACAGATTCTCTGCTACTAACCAGACCTGTAGACAGCAGCAGCGATGGCGTCATACAAATGCTTGATAACAaacagaggaggagaagaaagcaaaagacaaaaaaggggCCTGCGTGAACAAGACCCCTCGTTCCATGACGGCCTCGATCAAAGGCTCAGACCGGGCGATGAAGAGATGCACGCATGCAGATCTGAAGACTCGACCCAACGGCTGCTCCCCGACAGAGATATTCACAGAACTGACGAACAGTCTTCAGAATACCCAAACCACTAACATCGCACACtcaagacagagagaaacaaaaggGAAACAGAACAACGAGCAAGTCTTTGTCTGTCTTATAAGGCAAGAACCTTTATCCAATACCCTTAGATAGCTAACAGAACAACACAAAAGTAGTAAAGAAAAGCAAAGGGTACACAAAAAGGCATGCATGAGTGAATATTACTGGATCAATATAAAATCAAGAAACTCTTAGGCTACACAACGTGAGAGAACTGAACTTAGGACGAAAGCGACAGAAGAAAAGGTCTGTGGTTCCAACCTACATACAGTACTTGATTTCTGCCAAGTGCAACTGCAGAACGACACTCCAAACAGGACACAGCcacattaaagaaatagttcactcaaaaatgaatatgtagtcaccctcaggccatccaagatgtaaatgagtttgtttcttcatctgaacagatttggagtaGCAAATTGTGAAGTGTGTTTCGGTCAGAAGCAACAGATTTtgccttgatttttttttttattatgtggaAGTTGCGTGGATTATGATGATCAGTTGTTTGGCCTCTCGTTCTGACAGAATCCATTGGTAAGCAAATAACGTAATGCCAAATCTGTTCCTATGAAGAACCGCATCTAAAtcttgaattttcatttttgcacgaactgttactttaaaaattgAAGCTATGTGGGGGAGTGGGAAACACaatataaatcacaattttgacttttaggACAAGCCTGCAGTTATGGCACAGTGCAATGCTTGTACATTGGGGCAATCGAAGCAGCTGTTCCTGTGCTTAAGGCTACAACTGCCCAATCAAAATCCCTAACCAGTGATCTTACTAGAACCGTGATTGGCTAACACATCTAACCACCTGTGTGACAAACACTTACAGCTGATCCTATGAAATTTCAGTCAGGTTTAAGGAAATGCCCCATTTATATTTCTGGGTAATGCGTTACATTTGCAAAGCCGAGCATCGGGTGAACAATGGATCATGGCAAGACTCATGCACATAACCTAGCAGtatttcatttcagctggattgggtgggtgggtgggttGGTGGCTTCCTCCCTTCAAGTAAGCTCTTGGCAGCATGTGACAGAGTAGACAATGatatgaagacatttttttttttttaaagcagctcACACTAGAGTCACAGAATTACAGATCATCTGACAGCACAGGGCAGCTGAGCGTTAAGGGTACTTGAAATATGTCTGCGGTCAAATTGCTTTGGTATAATCGGTCAGAATCAGCCGTTTCCATCACGCAAGGCCATGAGACACCTGTGGCACATGTGCTTCGTCACAGTAAAGCAGTTTAATACACTGGTCGTCTGAATAAAAGGTCGCCAGTATGAAGGGAAGCAGAATTTCGgaagaaaatgtgcaaaatcagATACAAAGTCATGCTTAAATGTGAATTCATTGAGGTGAATGATTACCCAGGGGAAGCGGATGacattttttgaacatttaaaaaaaaaaaaaaattagaaaagagaaaatgaggaGAGAATCAGTATCCCAAGGATGCGCACACGCAATAAGACctcaaatataatatacaaaatagggaattttacaataaatggcatttaataatagcattttaacAGCCTACAAAGATTAATCTTCCCAAAAAGAGGTGTTATGTTTCTGAGATTCTAGCCCTCTGAGAAAACGGGCTCAAAACTACAGTggactttgtgtgtgtttgtgtgttttgagttatccatttaaagattaatttaatactacttaaacatggtaaaaacaCGTTCTTGGGTCTCTCGTCTTTAGTTAgtaatagttcagccaaaaatggaaattccagcattatttttaaaacctgtatgactttcttctttatGTCTAAAACGTACGACCTGActttcagaattaaaaaaagaaaaacaccagGGATCAAACACTTTTAAACTCAAACCTAACAGAAGACGACACTCTACAAGACTTCATAGTCGCTTCAAACACaacaaatgcaataataaatgtgtCTTGTTGCAAGGTGATATGACAATGAAAGCAATGCATGTACTAAAAATCAGCTTGGAGAACCAAACAAGCCTCATTTTCTGACTGAATGGAATCATAGTCTGAAGCTAGATAATCTGAATCTGTGCCTAGCATACAACGTGATTTTCTCTGAATCTGTAAAAGTTGCGTGCTGGCTTTGACTATAAGCAACTAGCAACAACTCCTCCAGACTGTAAATAAAGGAAATATCTTGTGTGTTCTAGCCTTAAAATGCGATATTGAgatttgcataaattaaattgaaaatctATGAAGTCATAAATTGAACTTGGAATATAATACACAAATCTTATGAATAACTTCTGTGGTGCTTTTTTATAGCACTTATTGGTGCTTTTAAGGTCACCATTAACTTTCATAatatggaaaagagcagaaTGACCATTCTTCTAAACATCTCCATTTGTGTTACATaaaagtaagtcatacaggtttgtaaaGACATGAGGATGCGTAAACGATAAACATTGTCCATTTTAGGGTGCATTATACCTTTAAAAGTGAGTTACCATCATGGCTGTATTTGCCTTAAATGTCTTCTTGAAACAGGaagaatgtgagaaaaaaaaaaaaaaaaaaaaaaacatctccccattactgttattattttacttcataaaaattgattttgttaGTATTTTGAAGTTGAGTAGAGATTAGATTATTCCCATAACtaaaattatgagatataacttacaaaatacagtttaaacaaCAATCACCTTCTAAATGTTGATCACGTTGAGCATGTTATACCTCTTTGCACATAACTAAACAAGAAGAACTAATGAAAGAATGAAGCCCTGTAGAAGTCCTAAACACCACTTTCACACAAGTGTCTAAAACGTGGTACTTTGCTGATCCGCTGAAGGATTTCGAGAAGGAGTTTCCATGAATTGTTCCCTGAGAGACCCTGCCCTTATTAGTTTCCATTCACCATTTTACCTGTTTCCAATCTCCATCAAGACCATCTTTCAGAACAGCAGAACGAATACATCTAACTAAGGGGGCAACAACCAAGAACATTGTCCCAGGTCTTCTAAAAAGGTTGTCCCAGGCCTTGTAAATTTTACTGATGGCCCTGTTTTAAGAAAAGCATAGCCCTGGCAGGACAGGCAAAGGTCTGAGGGAAAagtacacattcacacacaagttTGTAGActagagaggaaaaaaacaaatgtcagGCCTAACGGTGATCCtcaattttcagattttttccaCAGTCTTTTCAAGTAGTTCTGTTTGACAAATGACCACAAGCGCTTACCAGTACCCCTCCCCGTTGTTCCACTCTTGTTCATCAAAAAACATTGAATTCAAGATGATTTCTGCTCTAAAAGGGTAAAATAACTACCAGGCTTCCCTTGCCAAAGGAATCCCATgacgtttttattaaaaaaaaaaaaaaaagtccagctTTGCCTCAAAAGCATCAGTTCAAGTGTTGATTGACTAAGGAAAAAGTTTTGAAATCCTTACGCCACTGGATCACAGTGGACCATTTGGATTCTTGCCTTATGGCTTGGCTGAGGCATGTATTTCTCAACATGGCAAAACAGGCCAAGAACGTCTCTCCGTTCTGATCCATGCCAAGGGGCAGAAGTGACCTCAGAGCTGAGGTGAAGAAATGCACACCAGACCACATAAAACTTGGTCCTGTTGCTTAAGGTACTCAGTTTAAGGTACGCAGATAGACCCCCGTCCCCTTTGGTTCTCCAGGGGCAGCCATCAGATAACCTGCCATGCAGCTTGTCcgtacacataaaaaaacactaataaattaaaaacatgaaagccAAAGAATTGTCAAAGGCTTGCTGCCCCatgaaaatgaatggatggTTCATTTCACCTCCAAATAAGAtggatcttaaaaaaaaaaaaaaaaaaaaatccggaGCTGTGTTCACAGAGACCAGTGCATCTCGTCAAAGTCCACGGCCTCACCCAGGTTGGCATCGGTCTCCAGTAAACTCATAATGACCGCCATGGCTGCCTCGTCAGTGCTTAGAGCGCCTAACCCAGGAACCCCCTCCAGATCCAACTGAGAGCTCCCCTCTGGAGGACAGGAACACa

Function

GO: NA

KEGG:

id description
ko04711 Circadian rhythm - fly

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190167 lncRNA upstream 658 24435074 ~ 24435380 (+) True G128855
TU190166 lncRNA upstream 4229 24431168 ~ 24431809 (+) True G128854
TU190109 lncRNA upstream 53326 24345200 ~ 24382712 (+) False G128816
TU190110 lncRNA upstream 53326 24361298 ~ 24382712 (+) False G128816
TU190108 lncRNA upstream 53326 24382140 ~ 24382712 (+) True G128816
TU190168 lncRNA downstream 1841 24442373 ~ 24443159 (+) True G128856
TU190169 lncRNA downstream 3970 24444502 ~ 24445199 (+) True G128857
TU190172 lncRNA downstream 18187 24458719 ~ 24458934 (+) True G128859
TU190188 lncRNA downstream 83995 24524527 ~ 24525054 (+) True G128863
TU190464 lncRNA downstream 223919 24664451 ~ 24728979 (+) True G129038
XM_043264268.1 mRNA upstream 85881 24338891 ~ 24350157 (+) True si:dkey-103i16.6
XM_043264269.1 mRNA upstream 85881 24342924 ~ 24350157 (+) False si:dkey-103i16.6
XM_043216488.1 mRNA upstream 121058 24308176 ~ 24314980 (+) True si:ch73-62b13.1
XM_043264094.1 mRNA upstream 144579 24287138 ~ 24291459 (+) True zgc:153031
XM_043264087.1 mRNA upstream 149263 24277282 ~ 24286775 (+) True cry1b
XM_043264074.1 mRNA downstream 20384 24460916 ~ 24472951 (+) True slc17a8
XM_043216759.1 mRNA downstream 33705 24474237 ~ 24488921 (+) False nr1h4
XM_043216758.1 mRNA downstream 35819 24476351 ~ 24488921 (+) False nr1h4
XM_043216760.1 mRNA downstream 38060 24478592 ~ 24488921 (+) True nr1h4
XM_043216514.1 mRNA downstream 53401 24493933 ~ 24502864 (+) True LOC122322915
TU189952 other upstream 699192 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 856236 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 1997359 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 2029056 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 3879411 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU190171 other downstream 9233 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 143313 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 555239 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 854211 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 854211 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile