RNA id: TU190166


Basic Information

Item Value
RNA id TU190166
length 642
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G128854
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24431168 ~ 24431809 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtaaattgtagcttgtgtaaaataattttaatacttcaaaTTAAAGTTATAAGATGGCACAAGAATCTGATTCattattttggtattttgaACCCAATAGgctaatcaaatttaaaatattacagttttgttttttttgtcctttgatTATACATAACAACTTAAAGTGGCGAGACTGAGActaatatttaatcaataacTGATTTCTCAGTAGAAGTTTTTATGTTTGGCAGTACAATATTGACATACGATTCTGAAAATATCCTAATTATTTACAGCAGCTGTTTAGATTTACTTTGTAAATTCACATAACAagatacataattaaaataaaataaatagtaaataaataactaatgatCTGAAGTGTGTTCAAGTGTAATTTcagcaaatattcattttgtggataactattgcttttatttaaaatattcatccTGATAAATTCATGAACTTATCATATTTAAGGCCCCGTCACGATAAATACTGTAACAGTCATGATCTCCTCCACAGCTTCACAGCACTGCACTGCCTTTGAGAGGCCTCTCCATCTTCACTGTGTTTGGATCACACTCCAACATCTCTCTGATCCATTCGTCATTCAGCGCGCCTTCAATGAACTCCTCCTGACTGATAATGGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190109 lncRNA upstream 48456 24345200 ~ 24382712 (+) False G128816
TU190110 lncRNA upstream 48456 24361298 ~ 24382712 (+) False G128816
TU190108 lncRNA upstream 48456 24382140 ~ 24382712 (+) True G128816
TU190087 lncRNA upstream 133323 24297609 ~ 24297845 (+) True G128804
TU190086 lncRNA upstream 133835 24297109 ~ 24297333 (+) True G128803
XR_006253186.1 lncRNA downstream 1782 24433591 ~ 24446100 (+) True LOC122363046
TU190167 lncRNA downstream 3265 24435074 ~ 24435380 (+) True G128855
TU190152 lncRNA downstream 4229 24436038 ~ 24440532 (+) True G128841
TU190168 lncRNA downstream 10564 24442373 ~ 24443159 (+) True G128856
TU190169 lncRNA downstream 12693 24444502 ~ 24445199 (+) True G128857
XM_043264268.1 mRNA upstream 81011 24338891 ~ 24350157 (+) True si:dkey-103i16.6
XM_043264269.1 mRNA upstream 81011 24342924 ~ 24350157 (+) False si:dkey-103i16.6
XM_043216488.1 mRNA upstream 116188 24308176 ~ 24314980 (+) True si:ch73-62b13.1
XM_043264094.1 mRNA upstream 139709 24287138 ~ 24291459 (+) True zgc:153031
XM_043264087.1 mRNA upstream 144393 24277282 ~ 24286775 (+) True cry1b
XM_043264074.1 mRNA downstream 29107 24460916 ~ 24472951 (+) True slc17a8
XM_043216759.1 mRNA downstream 42428 24474237 ~ 24488921 (+) False nr1h4
XM_043216758.1 mRNA downstream 44542 24476351 ~ 24488921 (+) False nr1h4
XM_043216760.1 mRNA downstream 46783 24478592 ~ 24488921 (+) True nr1h4
XM_043216514.1 mRNA downstream 62124 24493933 ~ 24502864 (+) True LOC122322915
TU189952 other upstream 694322 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 851366 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 1992489 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 2024186 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 3874541 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU190171 other downstream 17956 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 152036 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 563962 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 862934 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 862934 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile