RNA id: TU190168



Basic Information


Item Value
RNA id TU190168
length 787
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G128856
representative True

Chromosome Information


Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24442373 ~ 24443159 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AACCAAAGTGCCTTTTCTTCTATATAGGGTTTAACAATGCAATTTGAAAATTATAGGTACACGCCTagatacaaaacatatttacaacatTCACAGATCTCAGTACTCACCCTCCGAGGCCTTGGAACTGCTAGGCTGCTCAGATTTATCCCCTGATCCACCTGGATTACTTTTACCGCTGAGTCAGgcggaaaaagagtcaagaaataATCTGTTATCTCATCGATCACAGAATTTGGGCAACAGGTTGAAGCATGACATTGATATGCAGTTATAGGAAAAACAAGATGAGATGCTGGTACTTACGATATAACTGTGTTGGTTGACACTATGTATTCTACTTCTTTGGTCCAGGGATTTATAAAACTAAACCACTGACTTTGTAAGTTGACAAAAGAGCCATATTTCGTTTTAAACTTATAGCAGTTTGTCTCAATCTTCTCTTTACTCCTCAGCACTGTGAAAAGAAGTGCAAAAATGAAATTGTCATTTACTTACGAACCAGTCCTTCCGATcccttattacattttatatttgacagAAAAATTGTGGCTGAATGTACTGTTGACTTATTTGCATACGATGAAAGTAAATGGGGATCCATGCACTTCCAAAATTACCAAGAGTACAATAGAGCTGTCAATGTGACTAGCTTGACAGACCTTTCATTAGTAGTACTTGTCTCATAGTATAAAAacttataaatgtgtaaaagatgaagaaacaaaaaggtATTAagagtcacatttatttttatatgcatgtaatTACACTCTAAGGTGCTGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU190152 lncRNA upstream 1841 24436038 ~ 24440532 (+) True G128841
TU190167 lncRNA upstream 6993 24435074 ~ 24435380 (+) True G128855
TU190166 lncRNA upstream 10564 24431168 ~ 24431809 (+) True G128854
TU190109 lncRNA upstream 59661 24345200 ~ 24382712 (+) False G128816
TU190169 lncRNA downstream 1343 24444502 ~ 24445199 (+) True G128857
TU190172 lncRNA downstream 15560 24458719 ~ 24458934 (+) True G128859
TU190188 lncRNA downstream 81368 24524527 ~ 24525054 (+) True G128863
TU190464 lncRNA downstream 221292 24664451 ~ 24728979 (+) True G129038
XR_006253143.1 lncRNA downstream 224325 24667484 ~ 24669844 (+) True LOC122362653
XM_043264268.1 mRNA upstream 92216 24338891 ~ 24350157 (+) True si:dkey-103i16.6
XM_043264269.1 mRNA upstream 92216 24342924 ~ 24350157 (+) False si:dkey-103i16.6
XM_043216488.1 mRNA upstream 127393 24308176 ~ 24314980 (+) True si:ch73-62b13.1
XM_043264094.1 mRNA upstream 150914 24287138 ~ 24291459 (+) True zgc:153031
XM_043264087.1 mRNA upstream 155598 24277282 ~ 24286775 (+) True cry1b
XM_043264074.1 mRNA downstream 17757 24460916 ~ 24472951 (+) True slc17a8
XM_043216759.1 mRNA downstream 31078 24474237 ~ 24488921 (+) False nr1h4
XM_043216758.1 mRNA downstream 33192 24476351 ~ 24488921 (+) False nr1h4
XM_043216760.1 mRNA downstream 35433 24478592 ~ 24488921 (+) True nr1h4
XM_043216514.1 mRNA downstream 50774 24493933 ~ 24502864 (+) True LOC122322915
TU189952 other upstream 705527 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 862571 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 2003694 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 2035391 22400974 ~ 22406982 (+) True LOC122363143
XR_006246928.1 other upstream 3885746 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU190171 other downstream 6606 24449765 ~ 24457560 (+) True G128858
TU190455 other downstream 140686 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 552612 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 851584 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 851584 25294743 ~ 25308065 (+) False kiaa0513

Expression Profile