RNA id: TU190172


Basic Information

Item Value
RNA id TU190172
length 216
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G128859
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24458719 ~ 24458934 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTcaataatgcaaattaatacTTTATGTGACCACCCCTCATTTGATATGTATAATGCATCAGCACAGAGGAAGACTTGGGCAGCATAGATTTGAACAGACATTTATGGTCATAGTGTAAGGATAGGTTAAAAGATCAACGCATAGTTCTACAACTAGTTAGGTAGTTTTAAACTACCTAAAAAAGGTACTCATCAGGGACATAATTTAAGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253186.1 lncRNA upstream 12619 24433591 ~ 24446100 (+) True LOC122363046
TU190169 lncRNA upstream 13520 24444502 ~ 24445199 (+) True G128857
TU190168 lncRNA upstream 15560 24442373 ~ 24443159 (+) True G128856
TU190152 lncRNA upstream 18187 24436038 ~ 24440532 (+) True G128841
TU190167 lncRNA upstream 23339 24435074 ~ 24435380 (+) True G128855
TU190188 lncRNA downstream 65593 24524527 ~ 24525054 (+) True G128863
TU190464 lncRNA downstream 205517 24664451 ~ 24728979 (+) True G129038
XR_006253143.1 lncRNA downstream 208550 24667484 ~ 24669844 (+) True LOC122362653
XR_006253144.1 lncRNA downstream 276253 24735187 ~ 24737012 (+) True LOC122362654
TU190615 lncRNA downstream 380128 24839062 ~ 24856231 (+) True G129115
XM_043264268.1 mRNA upstream 108562 24338891 ~ 24350157 (+) True si:dkey-103i16.6
XM_043264269.1 mRNA upstream 108562 24342924 ~ 24350157 (+) False si:dkey-103i16.6
XM_043216488.1 mRNA upstream 143739 24308176 ~ 24314980 (+) True si:ch73-62b13.1
XM_043264094.1 mRNA upstream 167260 24287138 ~ 24291459 (+) True zgc:153031
XM_043264087.1 mRNA upstream 171944 24277282 ~ 24286775 (+) True cry1b
XM_043264074.1 mRNA downstream 1982 24460916 ~ 24472951 (+) True slc17a8
XM_043216759.1 mRNA downstream 15303 24474237 ~ 24488921 (+) False nr1h4
XM_043216758.1 mRNA downstream 17417 24476351 ~ 24488921 (+) False nr1h4
XM_043216760.1 mRNA downstream 19658 24478592 ~ 24488921 (+) True nr1h4
XM_043216514.1 mRNA downstream 34999 24493933 ~ 24502864 (+) True LOC122322915
TU190171 other upstream 1159 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 721873 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 878917 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 2020040 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 2051737 22400974 ~ 22406982 (+) True LOC122363143
TU190455 other downstream 124911 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 536837 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 835809 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 835809 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 887471 25346405 ~ 25348594 (+) True mt2

Expression Profile