RNA id: XM_043216668.1


Basic Information

Item Value
RNA id XM_043216668.1
length 1124
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC122323037
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24583845 ~ 24588337 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACACCATTAATGGCAGTTTAAAAACAGTTTCTATTTTTATCTTGCTTGGGGTTTTAAAAGGTCTGGTCTAGAACCCGAGTACGTCCTTTTCCTTCTCATCATTTTCATCGCTCTCACAAGCGATTGCCCGTAATATTTAAAGTGCAGTAAAGATTCAGCTAGATAATCCACAACGGACATCATGGTTTTTATTGTGCTGTCAAGAGCCCTTGTGCTGGTCTCTCTGCTTCATCTTTGTACTCAGAGTGTGGAGGGTGAACGTGTGGACATTAATACTCTGGCCAAAATGAcaagattttttcattttaattatgaaATAGGGCAGTATGCAGTAGCCATCAACGTCCCAAAGAATCAGTGTAAGAAAGGTTTCATCCCGTCGAAATCTCCCAATTTCCTGAAAGACGACAAAAAAGCAGAGGTGAAAAATATCATAAGTGCTGATGAAAATCCAGTTTATGTGGGCAACGAGCTCATTGCTGCGGGCGTCCAGAAGAAACCAAATACTGCTCATTCAGAGTATCTGCTGATGAACCCTCCAGATAATTCACCCTTGACAAACTTGCTGAATAAGAGAAATGATGGTTGTGTGGTTTTCTACACATTAAACTCTCCCTGTATGAACACCTGTCTCAGTGGCAAGTACAACATCATAGGAGGgcttaataaattaaaagcataCGGGGGAATTAaagcttttgcttttaaaaacatctggaGTCAGGATCAAACCAGACAAGATGATCTGAAAGAGAAACTTAAGTTGATTGCTAGTCGAGTTCCGCTCTACCGCTGTAATGGAAATGCTTGTACCCTTTGTGGAGAGCCAGGGTCAGACACTGAAATCAATGTGTCTTGTTTAACTAAATaactattcattattattattattttggaatgCTGAGGTACTGATGTTCAATGACTCTTGCTTAATTCATTGTCTTGACTAAAATGTATTCTGTTTTTTCATGCATTGATTCAGATGCGCTCTGCGTTATTAAAATGGCTTTGCTATTGTTTTGGCGATGTTGAATCAATTTATTGATGTTATAACATGTTGGCTCTTTGCATTATATGTTACACAATTagcatgtaaaaacaaaataataaaaaaaaccactA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190188 lncRNA upstream 61891 24524527 ~ 24525054 (+) True G128863
TU190172 lncRNA upstream 128011 24458719 ~ 24458934 (+) True G128859
TU190169 lncRNA upstream 141746 24444502 ~ 24445199 (+) True G128857
TU190168 lncRNA upstream 143786 24442373 ~ 24443159 (+) True G128856
TU190152 lncRNA upstream 146413 24436038 ~ 24440532 (+) True G128841
TU190464 lncRNA downstream 76114 24664451 ~ 24728979 (+) True G129038
XR_006253143.1 lncRNA downstream 79147 24667484 ~ 24669844 (+) True LOC122362653
XR_006253144.1 lncRNA downstream 146850 24735187 ~ 24737012 (+) True LOC122362654
TU190615 lncRNA downstream 250725 24839062 ~ 24856231 (+) True G129115
TU190628 lncRNA downstream 412393 25000730 ~ 25000930 (+) True G129127
XM_043264711.1 mRNA upstream 16724 24550432 ~ 24570221 (+) True eea1
XM_043264712.1 mRNA upstream 16724 24550432 ~ 24570221 (+) False eea1
XM_043264775.1 mRNA upstream 37565 24535296 ~ 24549380 (+) False nudt4a
XM_043264774.1 mRNA upstream 37565 24535298 ~ 24549380 (+) True nudt4a
XM_043264986.1 mRNA upstream 52437 24527212 ~ 24534508 (+) True ube2na
XM_043264189.1 mRNA downstream 2566 24590903 ~ 24659950 (+) True LOC122362645
XM_043264194.1 mRNA downstream 83465 24671802 ~ 24675849 (+) True LOC122362651
XM_043264191.1 mRNA downstream 89323 24677660 ~ 24683938 (+) True LOC122362647
XM_043264190.1 mRNA downstream 150688 24739025 ~ 24741360 (+) True LOC122362646
XM_043264192.1 mRNA downstream 156528 24744865 ~ 24751103 (+) True LOC122362648
TU190171 other upstream 129385 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 850099 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 1007143 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 2148266 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 2179963 22400974 ~ 22406982 (+) True LOC122363143
XR_006246977.1 other downstream 407434 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 706406 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 706406 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 758068 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 1309086 25897423 ~ 25897505 (+) True trnal-cag_32

Expression Profile