RNA id: TU190615


Basic Information

Item Value
RNA id TU190615
length 3663
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G129115
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24839062 ~ 24856231 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttttttttttttttATTTTTGTCAACTCAGCACTTGAGTCAATGTATATTTAGGTACAATATACAAGGCAAACAGTTCtaatgataaatgtaaaaaaatatatgtcattTTACAATATAGTTACAGTACCATGTGACAAACAGTGTGGGAGAAATACAACAGAACTCTACATCATAACACATTCTCTTCACCTATGCAGCACAATATGTGAGATGTCCATTGCTGTAAATGTAGATTtagtacagtaaaattacaaatcAAGTACAGTACAATGCCAGTCAAGTTCAGAGTAGACACTTGAAAACAAGTCATAAAGCCTAAAACCGACAGGCGTACTAACACTGCGGCATTCTTTCTTAGCTCATGCATGAACAATTATTTAGTCAGTTGTTTTATTAGGAAGACAAAACCTtccaatattttcatttgtaacattttattacacCGCCAGCCCTAAAATTTAGCTGGCTGTTTGAAAAAAGGACCTGTGCTTTGCTCACAAGAAAGCATTACAAAACTATTGAAAAACATACTGTGACATTAAATAGCCATAGAACTCTGAAATGCATCCAAAAGACCATTCACAAATACAACTGGGCAAGAGGTATTCACTTCCAATAAACTgaatcttaaaataaactgacaAGGAAAGAACTCAGTTCTGACCTGGGATGAAAATTAATGTATACAGCAATGTAACACATTTCTAGCCTGAGAAAAAGTGCTAGTAATGGCTTCTTGATAACTATGGCAAAGTTAACTTTTAACACATGTCGGTGCAAAGCACCTCTTAATGCAACGTCAATTTTGTATCTTACGTGTTGTTAAAGACAACTGCAAAGATCATGCAAAGTATTTttatgatactaaaataactactACACACGTTTGAAGTATGCAGTATTATGACAACAtgataaatgtgttgttttcaaTGGAAAAAAAGCCTTGTCttataataaagaaagaaaatctgcCGATAAACACATTCTGCAACATTACAGAGTCATGTAAACAGTTGtcttattattgcatttttcatgTGACATGTTCAGTCTAAAGGAGTAATTAGATGGTTGCGAAACCAAGTTTTAATGTCTTTCAAAACATCTTGTGACAGAGTCATTTGGGTAAACAAAGAGTAAAGTAGTGACAGATATGGTCTATAGTGcatacactcacacaaaaacacaaaactgcatTTCAATGGAGCGGCGAACAATACCAGCCAGAGGTTTGCTCCGAGAACGGTCTGCACTAGGGTGGTTGTTGCTGGTGTAATTTTATGGGGGAATGAGCCAAACAAAATCCAATTTACCCTGGTAAAATTGCACTGAGCAAAAGATAGGAGGAAAATACTGAAAAGGGGAAGGAGGTTTACCTCATTTGTCACTGTACTGTCCAATCACAACACTTCAGAAGATGGGCGAATAGCCACACTGTTCCAATCcatgcctctgaagaaatgcacaaacaaaacGGAACTACACTAAAGAGACCCTTTTGGCCCAAGGTTgattgaataacattttttgttatcaTTCAGTGGGGAGATGGTATGAAATGTTGCTGAGTAGATTCATGCCACAATACATTGTATATTCAAGGCAATATTGACCCTGTGTTGGCAGAAAGGAGAGCAGGATAAGCAAATATTTAGAGGTATAGAAGaaaagagcaaacaaacaaacaaacaaaaaattaattaaatatcaacTTAACCCGAATATTAAGTGCTTACAATTCTGCTTAAGCAACTTTTTCAATGACTTAGAATAGAATGTCTGTCTGTTAAAATATGGAAAACAGCTACACtgtgaaaaataatttcttagtatgtatacaaacattttttaaaacaggaCACATTTACTTAAAGCAAAATTATGCAAGATTTTAAGAGTTGTTTTTCATGAACTTTTTGATTTAGAAGTTTACTGAAGTaatgaagtttatttttctaaCTTCACTGGcaaatgcttctcttttttctttttaagcacaaaccaaaacagaaacCAAAACCTCTGCTTCAAGCAAaaatctgcatgtgtgtgtatatatacatacatatatgtatgtaattttaCACATAAATGGGTCTGGGTTGAATCTAAAAGggcaaaatgaaaactaaaccTTACATTATTGTACAGTGTATACCTTGGACAAAGGACAGTCAAAACAGTGTAGCTTctcagagctttttttttttttttttgctgaggagtacacattatgtaataataatggaAAAGAGGGTACACAAATATGTActctaaatgtctttatatattaaaaaaaaattgtctaaaTAGTTGATGTCAGAATTGGCTGAAATGCCGCAGATGTGTGAAATCTTAAATTAgtctgaataaatgaatagatttgaataaataaagatttctcaggtgaataaataatttagaattgcagaaataaataaatagataaataaacagatactTGTGCCTTTAGCTACGGTTCAAAAAAGTTCTCATTGACTGGCACCTTGTGTAGTCCAGAGGCTTATGCTTCTAATGATAAGCCATTCTTTCTGACTTGCCGTTACCACAATACGAACACACTCAATATCAAACGCTATCTTGTGGTCCACATCATGAACCTCaatgtttccatttttaaacTCCCCTAAAGTTATATAGGAGGAGCACTGCCTTCCCTTTTTGGTTCCTACTAATTTCTCCCCCACTTCCAGAGCTCCGTGATGCAAAATATCATTCTGCCGATCATCTGTTCCCGTGATGATCTTGATTTTGCTGATTTTTGTTGCCTTGTTGAACACTATTACATAAAAGTCCCCAGTGGACGGAGCTTTGCCCCAGAAGTACTCATCCACGCTACTGTAAGCTTTGGCAGCATCATAGCtctcaaatacatttatgtttgtataCAAACTGGCAGGTGGGTTGTCTGGGATATCAAGGGAGTCTTCCTCAAAGTCATCATCCTTAAGTTTGTTTTCTGCCCCCTTATAGGAGGAATAGTAGCCCATGTGCTGGAAAAGGGAAGGCTTGAAACGAATCGCATCCTTCTGGGCCAGTAGGCCTCGGAAATGGATAAGAAGCCAATCGCAAGGCATCTCCTGATAGAACATGAGCAGGAAATGGGCAAGTCTGGGAAGGTCTCGTGAGTGGTACAGCTTCCCTATGTAGCCCAGTTTGGAGAATTCCAGCATCACCCAATATGATCCCTCTCTAGATGCCACCACTTTCTTCAGGGCAGTGAGGAAGTTTCGAGAACAGCGCACATCATCCTCCAACATCATGTAGAAGTCTGACAGGTTGGTGCAGAAGTTAAGCAGGAAAGCGTAATCTACATTCTGTTTGGAACGGAAGCGTACTCTGTCTTCTGGATCATTGTAATTTCTCTTCAGCCCATCCAGGGACGGGTAGTACTCCTCGGGTGCATGGATAACTAGAAGACGTCCTGCAATGATATGATGGCCGAACTTTCTGGAGATTTCCTGAACTAGGCTCTCACACCATGCCAGGTCAAAGTCTGCCAAGTGGACAACCACAATGATTTCTTTGAGCTCCTCGTAACTTGACTGATCAAAAATAGACTTGATGGTTTCCAGCAAGTAGTTTCCTCGTTTTCTTTTTACAGATGACAATCCAATAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253144.1 lncRNA upstream 102050 24735187 ~ 24737012 (+) True LOC122362654
TU190464 lncRNA upstream 110083 24664451 ~ 24728979 (+) True G129038
XR_006253143.1 lncRNA upstream 169218 24667484 ~ 24669844 (+) True LOC122362653
TU190188 lncRNA upstream 314008 24524527 ~ 24525054 (+) True G128863
TU190172 lncRNA upstream 380128 24458719 ~ 24458934 (+) True G128859
TU190628 lncRNA downstream 144499 25000730 ~ 25000930 (+) True G129127
TU190626 lncRNA downstream 157519 25013750 ~ 25016984 (+) True G129125
XR_006253142.1 lncRNA downstream 177887 25034118 ~ 25049605 (+) False LOC122362644
XR_006253141.1 lncRNA downstream 177887 25034118 ~ 25042184 (+) True LOC122362644
TU190635 lncRNA downstream 186857 25043088 ~ 25043820 (+) True G129134
XM_043216593.1 mRNA upstream 37959 24795815 ~ 24801103 (+) True alx1
XM_043263884.1 mRNA upstream 45963 24769396 ~ 24793099 (+) True lrriq1
XM_043264192.1 mRNA upstream 87959 24744865 ~ 24751103 (+) True LOC122362648
XM_043264190.1 mRNA upstream 97702 24739025 ~ 24741360 (+) True LOC122362646
XM_043264191.1 mRNA upstream 155124 24677660 ~ 24683938 (+) True LOC122362647
XM_043264616.1 mRNA downstream 134352 24990583 ~ 24999270 (+) True eif4g2b
XM_043264198.1 mRNA downstream 149848 25006079 ~ 25008464 (+) True lyve1b
XM_043264199.1 mRNA downstream 149848 25006079 ~ 25008464 (+) False lyve1b
XM_043264439.1 mRNA downstream 153056 25009287 ~ 25013620 (+) True rnf141
XM_043264440.1 mRNA downstream 153109 25009340 ~ 25013620 (+) False rnf141
TU190455 other upstream 251017 24583845 ~ 24588045 (+) False LOC122323037
TU190171 other upstream 381502 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 1102216 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 1259260 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 2400383 22434806 ~ 22438679 (+) True G128367
XR_006246977.1 other downstream 139540 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 438512 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 438512 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 490174 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 1041192 25897423 ~ 25897505 (+) True trnal-cag_32

Expression Profile