RNA id: TU190642


Basic Information

Item Value
RNA id TU190642
length 957
lncRNA type read_through
GC content 0.32
exon number 2
gene id G129135
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25063454 ~ 25141859 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTTttccactttttaattttctttgcaCCCAATATCCCAACGATTTCTACAAGCAGCAGTAAAAACAGAGCTCTATCGACCCCTGGTGGCCTTAAAACCCACCGTCACTTGCATTTAGCAAACTGACTATTACTCTGAAAACCATTTACAACTATTAAATAATGCCTTTATTGAATGACAAACAATACAGTCTCAGGTCTCAGGCTTAAATCTGGACATTAGTTTAAGGCAAACAACAGTTTTGGTACAGTATTGTACCAAACTGAATAATCccaaaaacacataaattgCAGTAAAAACACAATTGTGTTAATAACTTGagcatttaaaatagttaatacTGAAGTCACGTCTCCTTGAATGAGATTGCCTTTACAGTATGTTAACAACTGCTATATTCGTTCCATTGTTTTagcacaaaaattaattacaaaatgttttattagtcCATTTCGCATActtcattacaatttaaatttgtagaatttacatttttgattctttttgaaaactaaattaGGCATGACAATGCATTGCATGcataattacacttttttcttctttttttttttttttttttaacaatatttacttGGTGAGTTAGTTTATTCATtatgttttacttaaaaaaacaaaacaaaaaaaactctttttaaaactCATGAACTATGGGGAAGAAAAATCTACCATTACTTTGGTGGAAATGCACCAAAATGAACACATTCGCAAGATGTAGAAcatcatacaaaaaaatgtataaaatcacTTCAATGCAAAGGACAAAATGACACTGGAACGTTACAGTAGAGATTGGAATGGTGAGACAATTCTTCAGACGAAGCCAGGCTCCGATTTACTCTGCAAACTCACGTGGCTTACAGCTTTAGTGTGGTCCGAGGCTAACCCCACAGAGAcagtgcgtgtgtatattatatatatatatatatatatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253142.1 lncRNA upstream 13849 25034118 ~ 25049605 (+) False LOC122362644
TU190635 lncRNA upstream 19634 25043088 ~ 25043820 (+) True G129134
XR_006253141.1 lncRNA upstream 21270 25034118 ~ 25042184 (+) True LOC122362644
TU190626 lncRNA upstream 46470 25013750 ~ 25016984 (+) True G129125
TU190628 lncRNA upstream 62524 25000730 ~ 25000930 (+) True G129127
TU190813 lncRNA downstream 146284 25288143 ~ 25288537 (+) True G129246
TU190829 lncRNA downstream 204546 25346405 ~ 25347280 (+) False mt2
TU190833 lncRNA downstream 206897 25348756 ~ 25349038 (+) True G129262
TU190852 lncRNA downstream 298189 25440048 ~ 25442441 (+) True G129270
TU191004 lncRNA downstream 520638 25662497 ~ 25663585 (+) True G129360
XM_043264439.1 mRNA upstream 49834 25009287 ~ 25013620 (+) True rnf141
XM_043264440.1 mRNA upstream 49834 25009340 ~ 25013620 (+) False rnf141
XM_043264198.1 mRNA upstream 54990 25006079 ~ 25008464 (+) True lyve1b
XM_043264199.1 mRNA upstream 54990 25006079 ~ 25008464 (+) False lyve1b
XM_043264616.1 mRNA upstream 64184 24990583 ~ 24999270 (+) True eif4g2b
XM_043264600.1 mRNA downstream 35073 25176932 ~ 25187744 (+) True trhr2
XM_043264614.1 mRNA downstream 148143 25290002 ~ 25294615 (+) True LOC122362888
XM_043264615.1 mRNA downstream 152884 25294743 ~ 25309740 (+) True kiaa0513
XM_043264601.1 mRNA downstream 180797 25322656 ~ 25334005 (+) True phaf1
XM_043264604.1 mRNA downstream 180797 25322656 ~ 25334005 (+) False phaf1
XR_006246977.1 other upstream 67504 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 475409 24583845 ~ 24588045 (+) False LOC122323037
TU190171 other upstream 605894 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 1326608 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 1483652 23457100 ~ 23579802 (+) False cdh13
XR_006253170.1 other downstream 152884 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 152884 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 204546 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 755564 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 779408 25921267 ~ 26174156 (+) True G129424

Expression Profile