RNA id: TU191004


Basic Information

Item Value
RNA id TU191004
length 1089
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G129360
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25662497 ~ 25663585 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATGACTCCTGACAAATCtctatgtgcgtgtgtgtgtgtgtgtgtgccacagAGACACAATGACACACTCTCAGTGTGTCTCATTGTGCTCTCTCATGATGTAGATATGCTTGGCtagtctctctctccctgtctctgtctctttctctctctaccgGGTGATTGGGGCCTCTCTCTGCTGCACTCAAGGCTCTAATGAGCTCCTGGGGGGAAATTAGCGCTTGCATAATAAGCAAACCCCactgtttacacaaaaatcatGTTGCGTGTACATCTTTCCTACTctttttctttcgttttttacttttgctttgTCCTTGAGGCATTTCATTCCATGAAAGGGATTTTTAATCCATGTGATTCTTGGCTTCATTTGATGACAGTCTCCATCATcccatatttattttagctgtacCATGCACAAGAGCTGTAaccaaactaaaaataattggATAGAAAGGTTGAAATTgaatcattttttacatttgcataataacaaacacaaaaaaatgaaacggaGATGAACCCTCACCCTTCCCTTCCAACAAGAGTGCAGTGTTCTGACAGGCGACGCTCACCTCAGCACATTATACTGCTATCTCTTCACAATGCGAAATAATGCTGCATTTGAGGGCCCTCTCAAGAAAACTTGCTGCTTCGGTGCTCACCGTTCTGAGGATATGAAGAGGGTGAATAGACAAGTGTTGAGCTGTGAAATGTTAACATAGCACCATAAGAGCCGCAGTGTCCCTGCTGGCCGGCGCCCAGACAGTACAGGCCCGTTTAAAACTACTCATTAGTGTCTGCATGCTTATCATTTGTCTGAGCAGAACTATAGAATGAGAGCTGAGGGGCATGTGGGAAGTGAAGAGGAAAAGaatgtgagaaaaagaaaaatttaactTAGGCTGAGTGATAATTATAGCACGTTGATGTTTAAATGCAACGGATATTTTTAATTGGTGTAGTTATGATTCAAGATCACTATTTACCATTTGTTTGAATGTTACGTATTAAACAGAGGCTACTAACTCTGCAAAGCTTgacataaaattatattcagaAAATGGAACAGTATAAAAGAAAAT

Function

GO: NA

KEGG:

id description
ko04713 Circadian entrainment

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190852 lncRNA upstream 220056 25440048 ~ 25442441 (+) True G129270
TU190833 lncRNA upstream 313459 25348756 ~ 25349038 (+) True G129262
TU190829 lncRNA upstream 315217 25346405 ~ 25347280 (+) False mt2
TU190813 lncRNA upstream 373960 25288143 ~ 25288537 (+) True G129246
TU190642 lncRNA upstream 520638 25063454 ~ 25141859 (+) True G129135
TU191012 lncRNA downstream 11486 25675071 ~ 25675310 (+) True G129368
TU191014 lncRNA downstream 12972 25676557 ~ 25676861 (+) True G129370
TU191118 lncRNA downstream 303431 25967016 ~ 26221023 (+) True G129435
TU191132 lncRNA downstream 493322 26156907 ~ 26158502 (+) True G129438
TU191110 lncRNA downstream 496440 26160025 ~ 26160419 (+) True G129427
XM_043264112.1 mRNA upstream 67 25656644 ~ 25662430 (+) True cbln1
XM_043216491.1 mRNA upstream 23126 25614213 ~ 25639371 (+) True si:ch211-212o1.2
XM_043216492.1 mRNA upstream 23126 25614443 ~ 25639371 (+) False si:ch211-212o1.2
XM_043264895.1 mRNA upstream 50369 25471074 ~ 25612128 (+) True znf423
XM_043264896.1 mRNA upstream 50369 25471074 ~ 25612128 (+) False znf423
XM_043265011.1 mRNA downstream 108550 25772135 ~ 25782486 (+) True n4bp1
XM_043264933.1 mRNA downstream 123749 25787334 ~ 25803910 (+) False siah1
XM_043264932.1 mRNA downstream 129005 25792590 ~ 25803910 (+) True siah1
XM_043264935.1 mRNA downstream 131483 25795068 ~ 25803910 (+) False siah1
XM_043264348.1 mRNA downstream 190856 25854441 ~ 25875732 (+) True st3gal2
TU190830 other upstream 313903 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 354432 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 354432 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 666547 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 1074452 24583845 ~ 24588045 (+) False LOC122323037
unassigned_transcript_2193 other downstream 233838 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 257682 25921267 ~ 26174156 (+) True G129424
TU191117 other downstream 288813 25952398 ~ 25953772 (+) False slc24a1
TU191156 other downstream 565509 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 640302 26303887 ~ 26306806 (+) True G129468

Expression Profile