RNA id: TU191105


Basic Information

Item Value
RNA id TU191105
length 6512
RNA type TUCP
GC content 0.40
exon number 3
gene id G129424
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25921267 ~ 26174156 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGTAGCACCTAATAATAGACGTGTGTTGGATCACGGCTGGAGCTGGAGTTTTTAGGTTGGGTACCCCTGGTCTAAATTGAAGAACTGATATTAAAACATGGGCTCTGGATTTGGTGGACATCGTCTTATCGATCAgGTCTGGATATTGGTTCTCCGTGGCCAGACGGGCAGACTGGACGGCGGAGCGCAGGGCCCATCTGCGTCTGCGTTTTTTAGAGAGGAACGGACGGCTTTGAGAGTACGAACCGAAAGAAATCTCCCCGTCCGTGTGGCATCTTTTGTGCCTGGAGGATTTGTGTTCCTTTTTTCTGTAATGCTCGCTGTCTGTGCGTCTGAACCTTGCGGGAGCCTCCAAAGAATCGGTGACCTTCTGGTAGCGGGTGACTCTACCCCCGCGACCCTTATTGTAGAAGACCTTCCTCAGCTTGAGGACCATGGTGGAGGGCCCTTTGGACAAGCTCTGAGATTCTGCTGAGCTGGATCTGCGGCTCTGAAAAGACATCAATGACGTGCTTTCCGTCTCTTCATCGGTGCTATCAGAGGAGAAGTCATCCGAGGTCAAAGGTCGCCCCCAGGCAGAGTTCTCAGGCTCTTCTTCGATCTTTACCTCCACATGTGGTCCACTGTCAGTGGAAGTCACAGGAGACACTTCCCATTCATCTCTGTCTAAGGAACTGACGACGCTCCACCTCGCCGGTTCCTCTGTGAGCTCATCCTCTTGTGACGATGAACTGGTCTCCTCTAAAAACGTCCTCTTGGAGGAAATCTTTACTctgcctttctttttctttctctggaGGCAAAATTGTTTTTCCAGCTTGTCCACACATGTGGTTTCCGGTGTGAGAGGTCTGGAGGACTCGAGGTAGAATTCCTCAGCGCCATTCACACAGCCGGCTGATTCATCTGAGCTGTCCGTGCTCTCGCTCTTGAACGCTAAGCTGGTTTCTACTcctgtaaaaagaaaagaacaggaaTTTAGTATCAGCATTTCTTGACTGACAAGTATAAAGCTAGattataattaaagaaaaattaattaaccaGGCTTAGAATGGATTAGCATTGACTAAAGCAGAATATTGCTAGTTTAcgataaaagttattatttagtCAGCGTCAAGTTACTTTCTTCGACATATACATtccataattatatattatctttaaatattCCAATATTGTTCTAAATATCTTTTAGGTTCCACAGAAGCAATACaatcatgcaggtttggaaaaacTTTAAGGTgcgtaaatgacagaattagaATTTCTGGGTAAACTATCAACTAATGAAGGCTCATTAGCATATTTACAGATTGAATAGAATGatcattttttcagctttatttatacaaatcACTCAAAATAGAATTCCTTAAACAATGGAATCAGCTTCATGAGGAaagattttcagaaaaaaaaataaatataaaattcaaaccACTTTCATGGaacatagcttttttttaagttgtttggtttaattgtttggttttttttgagCTCAACAAAAAAGCCAGgtatattttgtttcatattacaggctgaaattattaaatgaaatgtaattttattctgAGATAATATTGGATTAAGAAATTTTAGCTGCTGCctgaattttgaaaatgttacagtgtaaattgttgatttaaaacaaaaaaagcatttaaagacCCAGTTTTCATTATGAACACAACCTTATGATACCTGATGATATCATTTGACTGGTAACATGATGGGGACAATACAATCAATACAATGTGATCAAACTGGTTTtctaataatagaaaaaatattacttaacaaTGACAAGAAAAACAATAGGCCATTTGGTGAAACATAATACGCGACAGAATATTTTTCCAATGTgtcagaaattatttaaaaaaggctaaAGGTGAtagaacagaaacaaaaaaaagtgtgtcttaagaaaaaacaaaaaaaaccaaactgcTGCACTATTAACTATGTGCGAGTTAATGTTCAAAAGAGGTAAAACTAATTGAGTGCCGTAACTGATGACAGACAGCTGTCTAAATCTGGAGGACCGTAAATGGCACTGCAGGTGAGAAATGCAACGCCACTGCATATGGCAACTCCTTCCAACCTCCAAAAGCACATTAACTTCCTTCcttgaaactgaaatatatcCTAAAGCATATCACTGTTCCGTTCCAGACAATATCTGATCAGAAACACACCTGCAACAAAACTGCACCAACAAGGAACTATAAGCAgctcaaaaatgtataaagccCTCTCTAAACAAAACTATTTGTGATTGGAGAAGGAGTTCTGGGGACAAGGTAATAAGAAGGTACCTGGGCATTTTTTGGACACCATCTGTAGCAGTGGaatctgcaaaaacaaatgtgtatcAAATCAAAAAAGTATGACAAaagtatgattaaaaaaacaaaaaaaacaaaaacaaaaacaaaacatgaacattAGGACTACAGGTATGCACCATGTACggttgattttaatataaaaataattaatgtaaacatacaatattaaaataattcaaataactGGCTGTTCAAAACCAAATAGgctttttatatcaaataatatgAAATTTATATAACTTTTAGCATTTACAGTATATGCTAAGCATACACATCACTGGGATTTAAACCGTAATATTAGTgattagaatatttaaatattttatatctaaagAACAAGATCTTAGCCAGAATGTTGTACAAAATCCATGTTGTACTATCATCCAAAAGGCACAACAGAAACGTGGAACtgaaaattaagtttattaaaatgataacaaagTTTCAGTATGCACATTCATCCTTCTAACTACTACAAatgttattatagtatttaacCCCAAATTAACCTCCATCAAGTAATGTTTtcatgaaaatggaaaataatatgCTTGTAAAATGTTATCTGTTCTTGTAGAAAGAAACCGGTTACCAAAAAATGGAACCACAAGTCTGATAATTATGAGTGTTttcttgaaatgaaaattccaCAGTAATGTTTTAAGCAACAAAGATAAAAGCTCCATCATCACCACAGCACCAGTCAGATCCAAAACTGAGCAATGATCTAATTAAAGAATTGTATTAGGGgtgccaaaatgttttttaagcatgcaacaataatatatgtaaatattaattcacataatatttaatgttatggCCAACAAATGATACATGGTTGATATACCATTCTGTACTATTGCCTATATTTAAACTGTacttaaaaaaacctaaaaacaattattttaaaagctacAGGAAAATTTAGCACAACAGTATAatttacaatgttaaaaatagtattaatttTGAGATTTCCTAAAGAGCGTGATTAACTGTTAATGTAGGTTATTGATATAATCTAAATATGAAACAGGACCTATTTCTAATTTAGTATCATATGGACtaataccttaaaaaaaataaaaaataaaaataaatcactgatATCAACCATTAATGGATACAATGCAAATATCTTGTGGATGCtgtagaagtttttttttccacaacaaTTCAACACTTTTTGATTACTATGCTAATAAAGATCAGTCATTCAGCACTCACCAAGGAACTTGCAGACACTGGCATGATAGAGAAGGTTAAGGACATCAGGGTATATATCTGGCAGATGTTTAAGGGACAGAAGTCTCCGTAGTTTGGAAGAGAAGGCCTTTCTGTGGAGCTGAGTCAGCTGCCTCTCCTCTGTGAGGGTGGTGGGCCTGAGCTCAACCCGATGCTCCTGCAGGACCTGGTCTATGAATGCACCTTGAACCTGAGAAAACAGCACCTCTTTGACCACCAACATGGGAATGAACACACTTTGAGCCCTCATGACATGAGGAAAGGGACATTCTCGGCTTTCAACATACTTTTGAAGTTGGAAGACCACCTTTTTAAGAGCCACTTCCATCTCATCACCTTTCAGCCATACCTCCTCATTTTGAGCCCAAGAGACAAGACACCTTCTGATCTTTGCCTGAGTCACGAAGGTCCAGTCTGCATAACCAGTCCCTGAGGTCCTGACATGGGGTTTGATTAACGCAGCAGTATATGAGTCTACAGAGAGACTGATGAAGCTCCATAAACTGGTGACGAGCATGTTTGCTGCTACTTATAATTGGCTTGGTCTCTAGTGGAGACTGAGGAACCTCAACAGGTTGGGTTACTGGAGCTTTCAGAACCTCAGGGATGACTATTTTAAAGTTGGCCAATTTGAGGCAATGAGGTGGGATTTTAGTGAGGGAGAATTTAGTCAGCACTGGAGGTGTTGCGGGCAACGTAGAAAATGGAATGTAGTCCATATTGTCTTTCACAGCAATCTCAGTCTTGCATGTGGCTAAAGATTCAGATTTTTCTACCAAGAAAGGATTGCTTTCTTCTTCAAAGTCACTCTTTACTATAACATGACAAGGAAGAGAGTCAGATGTATTCATGTCTGGCTCCCCTTGCTCCTCTTTGACCTCAGAACTGTCCTCCTGATGATTCATCTCCTCAGCAATGCTCACTTTCATTTCCGACTGACAAGCCGGTTCATCTGTAtccaatttttcttttttgatctTTACAGTCTCTGGCATTTCAACTGGAATGTCACTGTTAGCTGGTGACATCTGGGTGTCTTGTTTCAAGCTGAGGTCACTTTCACCTGAATTTGGTTCTGCATCACAGTTTTGAATTTCCGCTCTTGTTTAAGCAGTGTCGCCTCAGGCTGTGGCTTGGGACTTTTGAATTCCCTAGTGAAGACAACATGCCTGTAGCTtcgaaatatattttataaggaGCCAAGctaaaaactttattaataacTGGCATGGGTGGGGAGGATGGTGACTGAGGCTCATTATCTGACAATACATGGGTTGTgtcagtttttgctttttactgACCATGTCCGTTTCAAGTTCCTCTCTGGGCCTTTTAGCTAATACATCTTTGTCAGCTGGATCTGAAACACAATGCCTTATCTTAAGTACATCTTCACAGGAGTTTGTGGGAAATTCTTTGGAACTGTCTACAATAAAGCTAGTTTCAGACATCTCTGAGTGTTCAAGGTTAGTGGTGTTACTGAGACGTCTGTAGTGGGCCGGAAAAGGATGGAAAGCCCCAGTGGTTCCAGGCTGTTTGCAAAGCTCCCGAGGGGAGTCAGGTGTCTGCACCCTTCGTATGGAGAAATCAAGTGGTCGCTCTGATTGATGGACTGGGAAAGGTGGGTGTGGCTTATTATGCATTGGTGCTTGGTTACTATTAAAATGCATCCTATACGAATTATAAGTAGGATATTTTGGAATTATAGGATGGTGTGGGGGTACAACAGAACAGGATGGTGACATCAAGTCAGCTCGAGGGGAATGGAACTGACCCATGTGATGATGCTGAGCATGCTCATCTGTAATAACATTAGGATTCGCTTGGTAAGCCTCGTGGTGACTCTGAGGGTAATAGACAGTGGGACATGGAGGCATTGATGTGTATTTGGATATGCGAGGATGGTCCTGATATATTTTCGAAGGAACTCCATGGTGTGCCAATGTCCTTGGGTCATAAGTGTGGGGAAGACCCTTGTATATTTGTGGGGGAACTGGGGCACGTTGGCAGTACTCTGGTGTGGAACCAATAAACTGATGTGCAGTGTTGTAAGAATAGCTCGGTTGCATTAAAGAAAGTGACCTTCTTGTCTCATTTGATCTAATACCATGGTAACTCTCAGTCTTTCCATCTTTTATTCCCTCCGCGCCGTGCTCTAACTGCAAAACCCTTTGTTGCGCCAATGCCTCCTGGCCCTTTTTATGCAGGTAAGCCAAGCGACTGAAATGAGCAGCCCATTCGTCATCATAAATGCGAGGGGACATCCTTTGTGGTCCATGTTCCACACCGTAGTGCCCTGCAGTGCATCCACGCTCAGTACAGCAGGGGCTATGCCCATATATCGGTTTTGGAATAGCCAACCCAACACAGCTTTCTGCATCTGATCCTCCAGTGTGACTCTTGGGAACTGCCACTGGAGAGATGACTCCAGCCGCCCTGGGACTGTGCTGTCTGGGACTGCTAGCATAATAGGCCAACCTTTGCTTGGCTGCCAACTCTTGCGGTACAGCACAGCGCGTCCACCACCAGCATCCACAGGAAGGAGACTTTATCAGGCCTGTAAATGGTTGGAACTGGAATTGAACCCTCGGTGGCTGATGAGTGGATCCCTGGGCTCGGCCCATTTCTAATGCAGGTTTTTGAAGGACCCCATGGAGAAGGAAAGTCAAGTGCATCTTGTCCACCAAGAGAGTATGGGTAGTACGCTCTGCTGATTGGCAGAGCTTTGTCATGGGAATATTGTGGAAGACTGTCAGCTTTAGGGAGCCCTGTGGGGACTACAGAGCCCATTGCACCTTCCATATTACTTTGAATTAGAGGGTCGATGCAGCTCCGTCCCTGCTTACTGTTCATCTTGGACTGCCGACTCTGGCTTGACCCAGCTAAATCATAGCTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191014 lncRNA upstream 244406 25676557 ~ 25676861 (+) True G129370
TU191012 lncRNA upstream 245957 25675071 ~ 25675310 (+) True G129368
TU191004 lncRNA upstream 257682 25662497 ~ 25663585 (+) True G129360
TU190852 lncRNA upstream 478826 25440048 ~ 25442441 (+) True G129270
TU190833 lncRNA upstream 572229 25348756 ~ 25349038 (+) True G129262
TU191140 lncRNA downstream 38774 26212930 ~ 26213344 (+) True G129446
TU191154 lncRNA downstream 54938 26229094 ~ 26284050 (+) True G129454
TU191157 lncRNA downstream 102746 26276902 ~ 26326567 (+) False G129454
TU191158 lncRNA downstream 158070 26332226 ~ 26335988 (+) True G129455
TU191214 lncRNA downstream 205547 26379703 ~ 26380285 (+) True G129491
XM_043264798.1 mRNA upstream 292 25906919 ~ 25920975 (+) True arih1
XM_043216558.1 mRNA upstream 18352 25897542 ~ 25902915 (+) False LOC122322950
XM_043216559.1 mRNA upstream 18352 25897551 ~ 25902915 (+) True LOC122322950
XM_043264348.1 mRNA upstream 45535 25854441 ~ 25875732 (+) True st3gal2
XM_043264347.1 mRNA upstream 45535 25854441 ~ 25875732 (+) False st3gal2
XM_043264163.1 mRNA downstream 16848 26191004 ~ 26196388 (+) True LOC122362626
XM_043264250.1 mRNA downstream 126760 26300916 ~ 26303177 (+) True LOC122362692
XM_043264251.1 mRNA downstream 126760 26300916 ~ 26303177 (+) False LOC122362692
XM_043216744.1 mRNA downstream 171856 26346012 ~ 26357471 (+) False LOC122323090
XM_043216743.1 mRNA downstream 173016 26347172 ~ 26357471 (+) True LOC122323090
unassigned_transcript_2193 other upstream 23762 25897423 ~ 25897505 (+) True trnal-cag_32
TU190830 other upstream 572673 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 613202 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 613202 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 925317 24995771 ~ 24995950 (+) True LOC122323238
TU191156 other downstream 54938 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 129731 26303887 ~ 26306806 (+) True G129468
TU191155 other downstream 156316 26330472 ~ 26332010 (+) False G129454

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026418 False 4362 mRNA 0.46 4 NC_007129.7 18931484 ~ 18942098 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_04805165_04810980.mRNA True 3616 mRNA 0.45 2 CI01000013 4804479 ~ 4810980 (+)