RNA id: TU191110


Basic Information

Item Value
RNA id TU191110
length 305
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G129427
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 26160025 ~ 26160419 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTATCCTAATTGTTAAAGTAAATTTCTGTATGTCctctaatgttatttttacctCTCATTCCCAGTGGCTAAGGAAATGGATAAAAAATGTGATGATGACAGTGAGACATCAAACTGGATTGCAGCAAATACAAAGGAATGTCCAAAATGCCACGTCACCATTGAGAAAGATGGTGGCTGCAACCACATGGTGTGCCGGAACCAGAACTGTAAAGCAGAATTCTGCTGGGTTTGCCTGGGGCCCTGGGAGCCACATGGTTCTGCTTGGTAGGTACAGGTCTTTATAGTCaagtgttatttgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191132 lncRNA upstream 1523 26156907 ~ 26158502 (+) True G129438
TU191014 lncRNA upstream 483164 25676557 ~ 25676861 (+) True G129370
TU191012 lncRNA upstream 484715 25675071 ~ 25675310 (+) True G129368
TU191004 lncRNA upstream 496440 25662497 ~ 25663585 (+) True G129360
TU190852 lncRNA upstream 717584 25440048 ~ 25442441 (+) True G129270
TU191140 lncRNA downstream 52511 26212930 ~ 26213344 (+) True G129446
TU191154 lncRNA downstream 68675 26229094 ~ 26284050 (+) True G129454
TU191157 lncRNA downstream 116483 26276902 ~ 26326567 (+) False G129454
TU191158 lncRNA downstream 171807 26332226 ~ 26335988 (+) True G129455
TU191214 lncRNA downstream 219284 26379703 ~ 26380285 (+) True G129491
XM_043264898.1 mRNA upstream 197444 25952330 ~ 25962581 (+) True slc24a1
XM_043264335.1 mRNA upstream 216077 25940729 ~ 25943948 (+) True hacd3
XM_043264798.1 mRNA upstream 239050 25906919 ~ 25920975 (+) True arih1
XM_043216558.1 mRNA upstream 257110 25897542 ~ 25902915 (+) False LOC122322950
XM_043264163.1 mRNA downstream 30585 26191004 ~ 26196388 (+) True LOC122362626
XM_043264250.1 mRNA downstream 140497 26300916 ~ 26303177 (+) True LOC122362692
XM_043264251.1 mRNA downstream 140497 26300916 ~ 26303177 (+) False LOC122362692
XM_043216744.1 mRNA downstream 185593 26346012 ~ 26357471 (+) False LOC122323090
XM_043216743.1 mRNA downstream 186753 26347172 ~ 26357471 (+) True LOC122323090
TU191117 other upstream 206253 25952398 ~ 25953772 (+) False slc24a1
unassigned_transcript_2193 other upstream 262520 25897423 ~ 25897505 (+) True trnal-cag_32
TU190830 other upstream 811431 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 851960 25294743 ~ 25308065 (+) False kiaa0513
TU191156 other downstream 68675 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 143468 26303887 ~ 26306806 (+) True G129468
TU191155 other downstream 170053 26330472 ~ 26332010 (+) False G129454

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU92032 True 1759 lncRNA 0.38 2 CI01000013 4826318 ~ 4828164 (+)