RNA id: XM_043264898.1


Basic Information

Item Value
RNA id XM_043264898.1
length 2756
RNA type mRNA
GC content 0.48
exon number 13
gene id slc24a1
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25952330 ~ 25962581 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTGAAGAGCTGTCCTGCGGTGCGTCCTGCTTGACCTAAGCAGCGCTCCCAGCATCCGTGCCTTTCCCTGCAGCCCAGCTGTGAGACAGCAGCGCTCCACGCACCGCCGCGAGCGTCGTCTTTCACCCGGTCTGTGAAAGGAAACCTGCACCACCGAGAAAATGAGATGAAACtgtctgagagtgtgtgctGCATACCCCTGCGTCTTTTGGGGGGAAATTCTGGATGTTCTGGGTGTCATTGCCCTAAAAAACAACTTGGTGCCCTTTAGGAAGCATACTAGAAAATGTTCCTGACTCGAAGAAAGAGACTTCAGCTTAGCCGGATAATATTACTTCTGTCTGGGGTTTTCCTTTGTTCTTTATATCAGCTCACTATTAGAGCAAGACTACCAGAACCCTGGTCTGAGCCCCAAATAGCAGGAAAACCTGAGGATGGCTCTGATCCTGGCTCTGGATGGTCAGATATGACAGTGCTTCCGACTAATTTGACCACTGCTGAGCCAAATAGCTCCAACCACACAGATAGCGTCCAGTCGTCAGAACCAGCAACAAATGTATCCATCCAAACTATCTCTAGAACAGAGACACCTACAACAACCACAAACAGTACAGTCAACCAATGCATCTTTGTGGATCCAGACCTTCCAAAACCCACCCCAGTTCCTACGGCAACCGACACGACAACTGTAGTGCCCAACACTACAGCGCCCAGACCTGGTGATGCACCACACATGAAGGGCGTACCGGAGGACATCTTCTCCATTGAGGATCGACGCAAAGGCTGGGTTGTTCTACACATCTTTGGAATGGTATACATGTTTGTTTCTTTGGCCATAGTCTGCGATGAGTTTTTCGTTCCTACGTTGGGAGTCATAACAGACAAACTGGAGATCTCAGATGATGTGGCAGGGGCGACGTTCATGGCTGCTGGAGGCTCTGCTCCCGAACTCTTCACTTCCTTGATCGGGGTCTTCATTTCTCATAGCAATGTGGGCATTGGAACTATCGTAGGCTCGGCTGTCTTCAACATCCTGTTTGTGATTGGAATGTGTGCGCTGTTCTCGGAGATGCTTCACCTCACCTGGTGGCCTCTTTTTCGGGATGTTTCTTTCTACATTCTCGATCTCATCATGCTCATCATCTTCTTCTTGGACAATACTATTATGTGGTGGGAGAGTATGATGCTGGTGGGCGGGTATGCCGTCTATGTTTTCTTCATGAAATACAATGTTCAGATTGAGCGGGCCTTTAAGTCTCAACTCAGGAAACACAAGAACATCGTCAAAGTTATTGCGGTCGAAGAACCTGAGAAGGACAATGGGACCTCAGGCGAAGAGAACAGGCCACCTGAACCAGAAGACAAGAATAGATTAAAGCTGAAGCCCACACTGCAGCGCGGGGGCAGTTCTGCCTCTCTGCACAACAGCACCATGAGGAACACCATCTTTCAGCTGATGATTCACACACTGGATCCTCTTGGAGAGGTGAAATTTAAAGACAAGGCTCAGATTTTGAACGACATGGCCCGGGGGAAAGTAGAgaacaaaaagaaggaaaaatctGGTGAAGGTGATGATCAGACGGAACAGTCCAAGGATTCCAAAGACTCAGCTCCAGGAGCCAAGGAGGAAGAGGCTAGTCAAAAGCCTGAGGCACAAAAGGAAGGAGACACTGCAGCAGGAGGAGGATCAGAAAAGCCAGGAGGTTCAGATGATTCAGGGGATGATGAAGATGACAGTGACGAAGACAGCGATGAAGACAgcgatgatgacgatgatgatgatgaggatgaaaaTGAGGATGAGGCTGGAGAGGAAGGAGAAAATGATGAACCTCTGTCATTAGAGTGGCCAGATACCAGACGCAAACAGGCCACATATTTGTTTCTGTTGCCCATTGTCTTTCCACTGTGGCTGACAGTTCCAGATGTCAGAAACCCTGCATCCAAGAAGTTCTTTGTCATCACTTTCCTTGGTTCAATAGTATGGATTGCTATATTCTCCTATCTTATGGTGTGGTGGGCACATCAGGTGGGTGAGACCATTGGCATTTCTGAGGAAATCATGGGTCTTACCATTCTGGCCGCAGGAACATCCATTCCTGATCTTATCACCAGCGTGATTGTGGCTCGAAAAGGCTTAGGAGACATGGCTGTCTCGAGCTCTGTAGGCAGCAACATATTTGACATCACCATGGGGCTGCCGGTGCCCTGGCTGATGTACTCATCTTTTCATTCACTGGCGCCGGTGCCCGTGAGCAGCAATGGGCTGTTCTGTGCCATTGTGCTGCTCTTCCTCATGCTCCTCTTTGTCATTATCTCCATCGCTGCCTGTAAGTGGAGGATGAATAAAGTGTTGGGATCCACTATGTTCATCCTCTACTTTGTGTTCCTGGTGCTCAGTGTCATGCTAGAGGATCGAATCATCATATGTCCTGTGTCCATCTGAGCAAACCTGTTGATACAGTCCTGGCATTTGAAACGCTCTGAACTGTAACTTCACACATATTAAAAGCATCTCTGGACTCGCTGTTGACTTATTCTGTATTTTGCAAGATCTTTTGTAAAGGGATGCAATAACTGGCCATCATTTCCAAACTATGTTAACTGTTACAGGCACTTTTTTGGTCACCACTTTTGGCTTGTTACATTAAAATGGCAGAAAAGAGTAACAGGCCCTGTCCCAAATGGTCACCATTTGTGTTATCCTCACTTTGGTGATGTAATGCCATATGGATTGTTGAGTGTAGACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191014 lncRNA upstream 275469 25676557 ~ 25676861 (+) True G129370
TU191012 lncRNA upstream 277020 25675071 ~ 25675310 (+) True G129368
TU191004 lncRNA upstream 288745 25662497 ~ 25663585 (+) True G129360
TU190852 lncRNA upstream 509889 25440048 ~ 25442441 (+) True G129270
TU190833 lncRNA upstream 603292 25348756 ~ 25349038 (+) True G129262
TU191118 lncRNA downstream 4435 25967016 ~ 26221023 (+) True G129435
TU191132 lncRNA downstream 194326 26156907 ~ 26158502 (+) True G129438
TU191110 lncRNA downstream 197444 26160025 ~ 26160419 (+) True G129427
TU191140 lncRNA downstream 250349 26212930 ~ 26213344 (+) True G129446
TU191154 lncRNA downstream 266513 26229094 ~ 26284050 (+) True G129454
XM_043264335.1 mRNA upstream 8382 25940729 ~ 25943948 (+) True hacd3
XM_043264798.1 mRNA upstream 31355 25906919 ~ 25920975 (+) True arih1
XM_043216558.1 mRNA upstream 49415 25897542 ~ 25902915 (+) False LOC122322950
XM_043216559.1 mRNA upstream 49415 25897551 ~ 25902915 (+) True LOC122322950
XM_043264347.1 mRNA upstream 76598 25854441 ~ 25875732 (+) False st3gal2
XM_043264163.1 mRNA downstream 228423 26191004 ~ 26196388 (+) True LOC122362626
XM_043264250.1 mRNA downstream 338335 26300916 ~ 26303177 (+) True LOC122362692
XM_043264251.1 mRNA downstream 338335 26300916 ~ 26303177 (+) False LOC122362692
XM_043216744.1 mRNA downstream 383431 26346012 ~ 26357471 (+) False LOC122323090
XM_043216743.1 mRNA downstream 384591 26347172 ~ 26357471 (+) True LOC122323090
unassigned_transcript_2193 other upstream 54825 25897423 ~ 25897505 (+) True trnal-cag_32
TU190830 other upstream 603736 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 644265 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 644265 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 956380 24995771 ~ 24995950 (+) True LOC122323238
TU191156 other downstream 266513 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 341306 26303887 ~ 26306806 (+) True G129468
TU191155 other downstream 367891 26330472 ~ 26332010 (+) False G129454

Expression Profile