RNA id: TU191154


Basic Information

Item Value
RNA id TU191154
length 5112
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G129454
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 26229094 ~ 26332010 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttttttttttttttttttttttttttGTTAAGTGTAATTAAAAGGcctttattttctcatttgtttcagTACAGAGCTGGTAACACACATGGTAAATCTGTAGAGCTATTTGGTTCCCTTGACGTCTTTACAAGGATTGCTGATGCTCATGTACTGTCCACTAGGGGGTTGTGGGAAGAGTCTGTGAGCAACGTTTTCTCAAAGTGTCCCATCAAGGGCTAAAGCATGCGATTGATCCACACTAGGCACGACAATACGGACatgaacacacgcacacacacgagAACACCGAAACAGGTACAAACATAGCCTGAGGGACGAGCCCTCACAGTCTCCCACCGACTAAAGAAAAGAAACCCATCACAAATagatacaaatagaaaaaagagCGTTTTACAACTCTAGATAAGCAGAATGAAAAGTGCAAGAgaagaatcaaatcaaaaagacaCAATGGCAGGCTTTTGATTCTTTTATCCCCAGAACTTTGCTACGTGATCACGCCCAAGCAGACATAAAGGCATCAGCTAGCATTCGGaaagaaactaaactaaagaGAACATCTCCGTTACGGGCTTTAGAGCGGTTTCTCGTTGACTTGTATGACACAAAACAGTCACAGAGAGTTACGAAGATAACCGAGCTGGTTTTATACATGGAGAGCAACTTAGAGACGGACTCCATCAGCAGTTTTCGGACTGCTCTCAAATGTCTTCGCTTGCAAGTAACGACTCCGTGGTTTACGATCAggaatgtttcaaataaatgttcattgtgCACGCTGCCGTAGAGGCAGAATGGCAGTGCTCGAGTAACTCACGACAAATGATTATTCCTTATTAAAGGGcctatgcattattattaaaatcgcACGCATTCGCACTCAAACCTCACGCCATGCTGATTGCTCGGATAAGCCGAATTCCTGCTCCGAATGATCTTCTGTCCCGTACTGAACTCTGGCTTGTgaactgttaataaaaatgaacgGTTTGAATTGCCCTTTGCCCAAAAATGCATGCGTGTACGTACATAGTGGAATGGCAACAACTAAGACCACATGTACAGTAGAAGTTCATCCAGACGTCCCTAGCACACTTTGTGTAAAATCAAGGCATTATAAAACCCAACATACACCGAAATCATCGTAAACTCAAAGAAAACCCCTCAAGACGACACATTGTTAACCGAAAGACTGACTATTTCAGGTTGAACTGCCAATAATGCTAAACTTAGCACATCTTAGGAAACAGTGTGGCCCCGTAGCTTCACAGACTGTGTGGAATGTGGAGGAGATTGATCAGCCTACGAAAGGAAGGAGACGTTTTGGGATCATCTTAAGTACATCTATATAGCTGAGCTCCAAAGATTTAGCTCAAGTCTTATGGCTTTATCTTAttcacactcgcacacacaaacTTACGATTTATTGGCTAGTTAAACGCTGTTCTCATGTAAAAGATtcttaaataaaagcttttttttttttagaaaacagtgGGGACTCCAAGTTTTCTAACGCGATTGATAGTATTGTGCTCCGGCAACTTTGTTGCCAAGGTAGAAATCGGTTGGTCCGAAAAAATCACGTAAGAATGACGTAAAGTCAGCTAAAATGGCAGTAAACGTGACTTCTCTCGTTGGCACTGACAGCgaaaaagatgaagaaaaaaaacccaaaaagataataaagtgtaattcttttaaatataatgattcTGAAACTTTACATCGTAGTTCCAACAGAGATACTCTGCTGATTACAGGATCCTACAAGATGGGAGGAGGGGGGGGATATCCACTTGGAGCCCCCCGCGGGAAGTTTTGACTTCCTGCGAACGGATTCTGACAAAGACGCATACAAACGTtactctgaaaaataaatagaaataactgattttaaataaataaataaatacatcattttgTTCCTTAACAATATTAGTAGACGGCAAGCATGCGGCTACGTTTTCATTCTATATTAGTTCACACGAAGCACTTAACATACAGTATTTGCTCATGATGTCCAGGCATGGATTGAATCTGAAAATGAAGATTAGTCTAGTATACTTCATATTCTCTCCAGTACCCActcacagaaaataaatacatatttgatttgattagaaaatatacacagtatttaACCCCCTccgttttgttattaaaatgacaaagaacACCTACTTAGgtacacaatatatttttttgcttcatcTCTGAAACATGCGCATCTTTTTGTACTGTAACATGCAGTATCATAAAGTAGGAACTATGCATATATAGGTCAAACTACACGCCTATGGGTTCGGGGAGGGGGGTGTTGCttgcgtttttttgtttttttttcctttcgtGAAAGTCCTTTGAAATAAGAGACGTATCCGTGTAAGAGATCGCACCGGAACAAATGACGGTAAcggcaaagaaagaaaaaaaaaagaaaaggtttcgATCGGATACTAGAGGGGAAAGAAAGCATGATGTCACGTAAACGACTGATAAGCGCTAAGCACACATTCGTTTGACCTTGCACTGTGAATGTAGATGGAAGTACCCGCTGTTTCTCAATCCAACCACAGAGTTATTGCAACTGAACGCGGCCCGTCAGAAGAGCAGCTTCCATTTATCCGGTGGGAACCTCGTTCGGCAAACCTCACTGAAGCGGCTTTTTTCATTCGTTCGTTCGAGTGGCGCAAAACGGCAATATTCAAAATGGAAAATTACGTTATGTACTTGTAtgtcaaaaaaaagacatttagaattttttttccctcatgtAATAAAAGGCAAAGGGGTCCGATCTTGTTTTGGAACCTAATGACTTTAACTCAACGGATGAAGCCAAAAACGGTCTATAATGCGATTTGCAGACTTTGAATATAAAGCATGAGCTGATGCGCTTTTATTGTGCAGTTTTcgaatttttttacaatgacaGACGTTTCATTAATGCCGACTCGGTGTGGGAGTAGAGTAACGCTCCAGTGATGAGATGAAAGCCGCTAAAGTGACGTTTCCTCACGAGAACGACTTGTTTTTATTGGGTTACGGCATGTACACAACAAAGTCTCCCTCAGATCCATTCTTGGCTCTCTACATGTCGTTTTTGGCCTGGATGAAAAGTCTCTACTCAATAAATAACGCTCCAACAATCTTGATCCAACTCAGGCTTGCAATTTCGCTTCATTTCCCAACTACTTCATAACCGAACGCATATCAGTAGGTATCATCTTTGCCAAAAGAGTTTCTCCGGGAAATATGAGGATAAAACGCGCAAAGATTTAGCTCTGCGTCGGTCTTAAGCGAAACGATATTCTGAGACTCACATCCTCACACAATGACTCGTACGGTAAGCCCTAAAGCAGCTTTCAAATGACACAGGCTccctttttaaacaaatgcgaACTCTGACAAGTCGTCTCAAGAATGCGCCGTCACAAAAGCGTGTACCGAGATCGACAGAGCAATATGTACAGGATGCAGTTCCAGTAGTGCAAATAAGTTCAGCAGTTTGGTAAGATGTGCAGTTAAATACACACGTAACAGTGCCTTCAATCAGCTCTTCTCGTGAAACAATAACATGAAAACCGAAAGCGAAGGAATAGTTCGCTCATGTTTTTCGAAACCCGTATGAAATTCCCTCTTTCTTCCGTAGAAGACAAAAGGAGAAATTTCGAAGAATGTTCACACTGCTCTCTCCTGAGATTTTtggaaaatactgtattttttaagcTTAGTCAGCATTCACCTCCATAGTATGGAAGAGACGACACATGACCAAGTCGTacgtattttatgaggtggctaaaTCGTACAAATTCGTACGACCCCacttgtatgattttttttttttttNCGCAACCCAACTCGTCAAATATAAACGATTTGGCAAAAGGTCGCACGAATTAGCCGGGGCTGGAAGAGAGCGGCATGAACATTCTTTTGAACTCCTCCTTTTGTTTTCCGCCGCCGTAAGAAAGAAaagtgagcaaatgatgacttcatttttgttttttcgcgaactattcctttaaggagaGGATTCAGAACATCAAAAACTGCAGGTAACAGTAACGAAGCATTGACTGGAACAAAAACACACCTTCATTTAAAGTGCTCAGGCAGAATACGTTTTACCACAAGAAATCAAAGCAAAGAAACAAATACGCCGATGCTAACAGGAAGACGTCCCTGGCAGCTACGAATTGCTTATTTCACGATGTTTCAAGGCTTGTCTCCTTTTTGTCAGGGTTTGTTAGGATGTCGGGCAGTGGAAGAAGCCAGCCGACCGGCTGGAACTGAAGAATGGAAGAAGAGGTTGTTTTGCAGGCAGTGTATTCGACACCTGAAAGATTCCTTCTGTCTGGGCAGGAGCATCTAGTCCAACTATCTCTCCCGTTCCCACTTTTTTTGattaacttatttaattattcacaatGACAAACAATTCTTCACTGTCCTTTCAGACTCGACAAAAGCAACAGAACTGATTTCATCTAGATGACCAGAGAATCTAGAAGGAATGTGTTAAATTAGGCAGTGGAAGAGGCAGTGTTTTTTTATCCCTGGTCCCCGATGGAAAACTTTGGAATGctgtttatgatatttttagTCGTGAATGTGAGCTTACATCTCTTCTGTGAACGGACCCCAAGGATATACACCCCTACGAGCTCGGCCTGAACATCTGCGGGAAGAGTCTCTCTCATTAGACGCTTTCTCGTTGGAGCTGGTCTTCTTTAATACCTCTAGTCTGGCGGCCCATGGCTGTAATTCAGTGCTGATTGGGTAAGATGACGTGTTGTGCATGTCGAAAAGTGAAGGAAATGAAAGGGGGAgggaaaggagagagagagagagggagggaaggaAGAAGAGCAGGATTACTTCTTGGCAGTGAGGGCTGCTAACGTGGCATCCACCTCCTCCTCGGGTTTGAGAGGATGCCACTGAGCGATGGGCCTGCGTGGGTTCGCCAGCATGTCGGACCAGTGCCGGAGCTCGGTGCCCTGCGCTTTGCTGCCCACCCAGATCTTCCCGATGGCGTCGTTCTTGCCGATCTTATCGTAGTCGAGCACCGTGATCACAGCTTGTATTTtctgggagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191118 lncRNA upstream 8071 25967016 ~ 26221023 (+) True G129435
TU191140 lncRNA upstream 15750 26212930 ~ 26213344 (+) True G129446
TU191110 lncRNA upstream 68675 26160025 ~ 26160419 (+) True G129427
TU191132 lncRNA upstream 70592 26156907 ~ 26158502 (+) True G129438
TU191014 lncRNA upstream 552233 25676557 ~ 25676861 (+) True G129370
TU191158 lncRNA downstream 48176 26332226 ~ 26335988 (+) True G129455
TU191214 lncRNA downstream 95653 26379703 ~ 26380285 (+) True G129491
XR_006246935.1 lncRNA downstream 123739 26407789 ~ 26408862 (+) True LOC122323030
XM_043264163.1 mRNA upstream 32706 26191004 ~ 26196388 (+) True LOC122362626
XM_043264898.1 mRNA upstream 266513 25952330 ~ 25962581 (+) True slc24a1
XM_043264335.1 mRNA upstream 285146 25940729 ~ 25943948 (+) True hacd3
XM_043264798.1 mRNA upstream 308119 25906919 ~ 25920975 (+) True arih1
XM_043216559.1 mRNA upstream 326179 25897551 ~ 25902915 (+) True LOC122322950
XM_043264250.1 mRNA downstream 16866 26300916 ~ 26303177 (+) True LOC122362692
XM_043264251.1 mRNA downstream 16866 26300916 ~ 26303177 (+) False LOC122362692
XM_043216744.1 mRNA downstream 61962 26346012 ~ 26357471 (+) False LOC122323090
XM_043216743.1 mRNA downstream 63122 26347172 ~ 26357471 (+) True LOC122323090
TU191105 other upstream 54938 25921267 ~ 26174156 (+) True G129424
TU191117 other upstream 275322 25952398 ~ 25953772 (+) False slc24a1
unassigned_transcript_2193 other upstream 331589 25897423 ~ 25897505 (+) True trnal-cag_32
TU190830 other upstream 880500 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 921029 25294743 ~ 25308065 (+) False kiaa0513
TU191172 other downstream 19837 26303887 ~ 26306806 (+) True G129468
TU191155 other downstream 46422 26330472 ~ 26332010 (+) False G129454

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044945 True 10595 lncRNA 0.37 2 NC_007134.7 6313582 ~ 6324914 (-)