RNA id: XM_043216492.1


Basic Information

Item Value
RNA id XM_043216492.1
length 2344
RNA type mRNA
GC content 0.46
exon number 7
gene id si:ch211-212o1.2
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25614213 ~ 25639371 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGCTTACTAGGAAAGGGAGAATGGCTGCGGCGCTACTGTCAGAGACGGAGATCAGGCATCGGTCTATGGCAGAGGAGGATCCGAACGGGAATGAACATGGGGCGGCTGCACGCAGCACCGCGCCTCGCTGGGGACCGCAGCACGCCGGGGCCCGACAGCTCGCCAAGCTTTACTCTCCGGGAAAACGGCTGCAGGAGTGGGTCTGTGTGATTCTGTGCCTCTCGCTCTTTGTTATAAACCTCTCCTTCCTTTTCCTCAACTTCTCCACAGTGCACATCTACAAAATCATCTTTGGCATTGTGACTGGTATAGTGACAGCAGACTTTGCCTCTGGGATTGTACATTGGGGAGCCGATACATGGGGTTCAGTGGACATCCCAGTAATTGGGAAGGCATTTATTCGCCCGTTCCGGGAGCACCACATTGATCCGACGGCTATCACACGGCATGACTTCATAGAGACTAATGGAGACAACTGCATGATCACCATCCTGCCTCTGGCCCACATGGCCTATAAATTCCTCTCCTACCCACCAGATGCCCTTGCAGAGTCCTACCCCTgggaatgttttgtttttgcgttGGCGGTTTTTGTAACCATGACTAATCAGATCCACAAGTGGTCCCACTCCTACTTCGACCTGCCACGCTGGGTCACACTACTGCAGGACTGCCACCTAGTGCTGCCACGGAAACACCACCGGATCCATCATGTGTCGCCACATGAGACGTACTACTGCATCACCACAGGGTGGTTGAACTACCCGCTGGACAGAGTGGGTTTTTGGCGGACATTGGAGTGGTTGATCGAGAGATTGATGGGTCAGAGGCCACGCAGTGATGACATGGCCTGGGCCAAGAAAACCGAGTGAGCAGGAAGACAGGACTGAACCCCTCCGTCCTCCATCTTTCCCCTTGTTTAGGGGGAACAGAAACCGAATATGGGCCTTACCTCTGTATCCCAAAACCGCTCTCCTGTAATGTTCCTGTGTTCCTCCATCTCCCCTGTCTTCTCCACAGCACAGAACCACAGAGCACTCTTACTGCTGGGGCCTTTTCCTGTCACAGGTCAGCTACACACAAGCCATCACCTGTTCCTCCTCTACTGGCTTCCGTCCCTGTTTTGTAGATGTCCACACCCACGAAATGGTAGAAAGACGAGATGAAGTTCAAAACGGTCGTTTCAAACTGTTGAGATAATGATGAGAGACACTGTTCCTCTCACAATCATTTCCTCAATCTCCATGTGCTTTCTCGTTTCggtgtgtaaaatgtatgttttctggAGGTTGGGCTCTCCAGAGGACCGAAACCATGTTGTGATTTTCCCAGCATGGTTGTCATAGCAGTGCATGGAATGAGAGAAGCAATTAAATGTGGATTTGATTCCAGAAACGGCAAGAAAAGATTTATCGCTATTTCAGGCACTCTCCAGTTTCACAAAAGCATCTCGGCAGTGTTAAAACCCTCCATTAGTTTGGACCGAAGGACGCACGGTGGATCCATTTCTCAAAACGCAGGAAAAGGGGTTTGTTGGCCAACCATCGTGGTCAGTGCTCAGTTGACCCAACTGAATGTTTTCCCTGAATGTTTCTTACTGAGCTTGTGTTGGCCTTAAGTACAAACCCATTACACTTATTTCTAATCAGCTTACTGGGGCTTAGCGGTGATGAACATTGATTGCGTCTCTGGTGTGTTAGCGTGACATGTTATTGATATTTGGAGTAGTATTAGCAGTCTAGCTAGTGATGTCCTCCTGCTGTATCCTGTGGTACAACGGTTTAGCAAAGGTTGTACTAGCAAAAGGTCACTTTAGAAAAAGGTCAATTTGAATTTGAGTAACCAAGCTTTATTAAAGAGAATCATTACTGGGGTTTTTTCTTGTTGAATGATATTTGCACTCTATTTGACCAATGGTATTTCTCATGCAAAACTAATGCGTAAAACAGCCAAATACACTccctatatttttttttctcgctcTTATTTACACTTGCACACTTACAGACTTTCATCATGAAccctaaaaaacacacactatgAATTTCCTGTGGATTTTTGTTTCTCCATTTGCGCTGTACTGATAAATGGAGAGAATAAGGGTTTTATAAAGTGTTTCAGTATGGATTGTTTCACGTTCTCTTTCAACAGCTGCAGCTCCACAATTTGGGTTTTAttgtctggttttttttttttttttttaaatcatagtaCAATTTAACTTTCAGCcttgtatttgttatttgtttttattttccatctCGCAGCTAATGCTCGCTGCTAGTCTGCCTTAAACcgatgtttttattagctgtatgatttaataaatatctaataaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190852 lncRNA upstream 172002 25440048 ~ 25442441 (+) True G129270
TU190833 lncRNA upstream 265405 25348756 ~ 25349038 (+) True G129262
TU190829 lncRNA upstream 267163 25346405 ~ 25347280 (+) False mt2
TU190813 lncRNA upstream 325906 25288143 ~ 25288537 (+) True G129246
TU190642 lncRNA upstream 472584 25063454 ~ 25141859 (+) True G129135
TU191004 lncRNA downstream 23126 25662497 ~ 25663585 (+) True G129360
TU191012 lncRNA downstream 35700 25675071 ~ 25675310 (+) True G129368
TU191014 lncRNA downstream 37186 25676557 ~ 25676861 (+) True G129370
TU191118 lncRNA downstream 327645 25967016 ~ 26221023 (+) True G129435
TU191132 lncRNA downstream 517536 26156907 ~ 26158502 (+) True G129438
XM_043264895.1 mRNA upstream 2315 25471074 ~ 25612128 (+) True znf423
XM_043264896.1 mRNA upstream 2315 25471074 ~ 25612128 (+) False znf423
XM_043264897.1 mRNA upstream 2315 25471074 ~ 25612128 (+) False znf423
XM_043264493.1 mRNA upstream 150340 25457998 ~ 25464103 (+) False si:ch211-216l23.2
XM_043264112.1 mRNA downstream 17273 25656644 ~ 25662430 (+) True cbln1
XM_043265011.1 mRNA downstream 132764 25772135 ~ 25782486 (+) True n4bp1
XM_043264933.1 mRNA downstream 147963 25787334 ~ 25803910 (+) False siah1
XM_043264932.1 mRNA downstream 153219 25792590 ~ 25803910 (+) True siah1
XM_043264935.1 mRNA downstream 155697 25795068 ~ 25803910 (+) False siah1
TU190830 other upstream 265849 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 306378 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 306378 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 618493 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 1026398 24583845 ~ 24588045 (+) False LOC122323037
unassigned_transcript_2193 other downstream 258052 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 281896 25921267 ~ 26174156 (+) True G129424
TU191117 other downstream 313027 25952398 ~ 25953772 (+) False slc24a1
TU191156 other downstream 589723 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 664516 26303887 ~ 26306806 (+) True G129468

Expression Profile