RNA id: XM_043216514.1


Basic Information

Item Value
RNA id XM_043216514.1
length 4468
RNA type mRNA
GC content 0.41
exon number 19
gene id LOC122322915
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24493933 ~ 24502864 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCTTGTCTGTTTTACAGATgattaatcaaatgtttttgctgttctGCAAACATCACTATGGAGGAGCAACAGAAACATGAACTGAGGCCGTCTTGGGATGTGTGCAGAGAAGTGCCATACATTCAAAATGAGCAGATGCCAAAAAAACGAGTGCAGTGTTTGAAATGGTTCTCGTGTGCCATTGTTGGCATGCTTGTCTTCGTCCTTGCACTTCTCAGTAAAacatcatttcttcttttaataACATTTGGGAACAATGAAACTAAGATTATATGTTCAGAACAAAAACCAACTGCCCTACTTGGGATTGGCTTTGTTCTGGTCGGGCCAAGTGTTCTCCTTCTGCTTAAGAGCACATGGaagttcattttcaaaagtgCAACCATGCCCTcgaaaaaaactcttttttggGTTCTGTGTGTTGAGTTCTTGGTAGCACTGGGAGCAGCAGTTCTAACAATAGTAGCTATGCCACACTTTGACATTGTCACAAATGTGATGATCCTAAATAGCGTGAGCATCCTGTCTGCAGTGTTTCAGGTGGTAGCAGAGTGTcttgcaaaagaaagaaagcggcTTATAATGCTCCCTGTattatccatttttttaatagtgacAGGTTACGTGCTCTTTGCAATCAATTATTTGCTATTTGAAAGTTCCTTAGAGATAAATATATCAGTTGGCCTCGCCATCGTTGGGACCATCTTTGTTTCTGTGAACTGGTGGGAGAACTACAGCACGCTCTTTGCTGTACCGTTTCTAGAGGATATTTCCAGAGACGTCACTCAGTCTCGTAACGTGGTCTGCATCATCTCCAGTTTGATGAGAATCCTGGTTACATCAGCTGTGGTTGGAGCTTATGTTCCTCTCTCAGGTCAAGAATGGAAATCAGTCAAACTAATTTTCCAAACAGTCTctgtttgtcttgtttctttGGTGGCAATCCAGATTGCTTCCTCTGCCTTGTGCCGCTGGTTTGTGGTTGTGGCTTGTAAGATGCATGCCCTGCGCCGCAGCTTCGTTCTGCCCATGTACCTGGCCTCGATCACAGTTTTGGCAGTTTTTTTAGCTCCAATTGCAGTCGGACTCCcagattcaaataaaaattctacCTGTTTTGAGACCTTTCAGCCAGAATCCAGTGACACATGGTTGCATTTGTTGCTGACTGATGCTACAAGAACTCTGAACACCAGGGATATTGTTGTAAATATGAAGATAGATGGACTGGCCTGTTTGGGCTGCTCTGCTCTGAGCTGGTGGTTGGGACTCATGCTGAGTACAGTTTACATTTGGTACCTGAAGATCCATCGAATAGAAAGAACCCAAGATCTGTTTGTGCGTCGCATGTATGAAGGAGCGTTTCTGGAACAGTCAATGTTGTTAAACACCCGTTTTGAAATTAGAAAGAAAATCAAGGAGAAAAAGTGTGCAAAAGGAACCATAAGAGTGTTTCTGTGTGCAACGATGTGGCACGAGACCTACGATGAAATGATGAAGATAATCATTTCTATGTTAAGGCTTGATAAATACAGGCCCAAGACAAAGGAACAGAGCGATGTTGAGTTTGAAttccatatttattttgatgatgcTTTTAAGGATGATGATAATGGAAGGCATGCAAATGAATATGCTGAAATTCTTGTAGAAGTTATTAAAGAAGTTTACAGCATTTTCAGTGAAGAGGATCCATGTGTATTCAAGGGAAAGTCAGCACTACCACATCAGAAAATCATAAACACCCCTTATGGGGGTAGACTGGAATACACTCTGCCTAAAGGCAATTTGATGATGGTTCACCTCAAAGACAAGACACTTATCCGTCACAAAAAAAGATGGTCGCAGattatgtatttgtattacatTCTTGGTTGGAGACTGAACAGACAGTACTTCAAAAAGCTTAAGGCAGGTGAAGAAATGCATTACCTTAAGGAGAAATTGAAGaaagagagggagaacaCATACATCTTGGCCCTGGATGGAGATACTGATTTCCAGCCGTCTGCAGTCATGCTGTTAATCGACAGACTTAAACTCTACCCAGAAGTTGGCGCTGCCTGTGGCAGGATTCATCCAACAGGCACAGGGCCCATGGTGTGGTATCAGAAGTTTGAATATGCGGTGGGCCACTGGCTGCAAAAGACTGCAGAGCACGTGTTCGGCTGTGTACTGTGCAGCCCTGGTTGTTTCAGTCTTTTCAGAGGAGATGCACTCATGGACGACAACGTCATGAAGAGATACACAACCAAAGCCAGTGAAGCCAGCCACTATGTCCAGTATGATCAAGGTGAGGACCGCTGGCTGTGTACTCTGCTGCTGCAGCAGGGCTGGAGGGTGGAGTATAACGCAGCATCTGATGCCTACACCAACGCTCCACAGGATTTTAAAGAGTTCTATAACCAGCGCAGACGCTGGGGACCCTCTACCATGGCCAACACCATCGACCTCTTGGGCTCAGGAGGACTGACCTCTCAGAAAAACAGCTCTATCTCAAAACTTTACATCTTGTACCAGATTATCAGCATGGCAGCTTCAATCCTGGGCCCTGCCACTATCTGTCTCATGATATCAGGAAGCTTTGTGTTCATCTTGGAAATGGAAGAAAATATAGCCCTAGCTTTGGCCATAGTGCCCCCCACTGTTTACCTCATCCTGTGCTTCAAACTCAAATCTGACACACAGATTAAAATTGCAGCAGTCATGAGTGTATTCTATGCATTTCTCATGGCGGGAACAGTTCTCTCAATCATAGGTGATTTAGTGAAACAAAATACTTTTCTGACCCCCAGTGGTCTGTTCCTCATCGGTATGGTGGTTTTGTACATCATCACGGCAGCTTTACACCCTCAGGAGTTCTCATTGGTCATCTATGGACTGTTATACTTCCTCTGCATTCCTAGTGGATATCTACTCCTAGTTATTTACTCCATAGTCAACATGAACAATGTCACGTGGGGCACTCGTGAAACCGGCAGCCAGGCTAAAACTACTGCAGTCGATACCATCAAGAAGAAGATCATGAACGCCACATGCTGCAAATGTCCATGCTTGCAATCTCAAGATCTGAGTGAGAAGATGTTACAAGCAGGAGCtacaacaaaaactgaaaagccacataatgaaaacacaaaggAAACACAAAGGGCTCATGAGTTGCAGTTTAGGGCTCATCAAACTTGGATTGAACATCTACAGATGAAATCCTACGAATTTCCCTTGGATGAATCTGCACTGCCTTTGGATGAAATAAATTTTTGGAGAGATCTGCAGAAGAAATATCTGGAACCTCTAAAAGAGAATAAAGAACAACAGGAAAAAGTTGCTGATGATCTGAGAGAACTTAGAAATAAGGTTACATTCGCCTTTTTCTTTTGCAATGCACTTTGGCTGGTGGCAACTTTCTTCCTTCAGGCGATTGGTGACTCAGTCTCTATAAAGATCCCAAAAATCTATCCCAATGGGACATATGACCCAACAGAAGTGTTTTCCCTAGATCCAATCGCACTGATGTTTCTACTGAGCTTCACAGTGCTGCTGTTAATGCAGTTTGTTGCAATGCTTTACCACAGAATCTACACATTAATCCATTTTGTGGCATATGCTGACACAGAAATTAAATCCCATAGAAAGCAGTCACATAATTTGCATCAGATCCTGGACTCAAACCACCAGTCTGAGACGTATGGGCCGGATACAGCTTTATGTTATAGCAACCCATCTTCTAGGTCTATTACTTcagtataatgcatttaattacattgtTCTGGTATGAAACTCTAAATGGCGCTGCAGTCCAATCAGGTCTATCTCAGTCTGATCTAATGACATCATTACCACACGGCAGAGCTGATGGTTCTCTGTTGAATCAGTAGCCAATCAGCTCTCTGCtcaacaataatatatatgacTGCCGTAGCAGTTTTGCAGCGTGCTTCAGAAAcactccaccttccccagctccacctgtatagaacTGCTACACTGGTGCTGCAGCAGAGCAAGTACTGACAAGCAAGaaatgctgctgctgcaaataTAACATACACAACATAATCCATAGTGTGAATCATCTTGTAGTAACTTGGAGAGTTGTCAtgacaaaatattgtttataatcCAGTGTGCAAAAATGCAGTGCAAATAGAATGTTTcgaatatttatttagcttttaaacCTGAATTCAGAGTAAAACATCAGACCTgacaattaataaatgatttgcacaatatgcaaattaataattacacacgtaaaataaattatttagtaCTGAATTTATTAGCATTGAATATTATTGACATTATATGAAAAGACCAATTATGTGTAGTTTGTTAGCCAGTGTATTATTTTACTTcctttttattcaataaattgcactgttatataaattattttagatatatttcttcaaacacatttattgtagagtacatttaaataaattaaggtGATATA

Function

GO: NA

KEGG:

id description
K00698 CHS1; chitin synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190172 lncRNA upstream 34999 24458719 ~ 24458934 (+) True G128859
TU190169 lncRNA upstream 48734 24444502 ~ 24445199 (+) True G128857
TU190168 lncRNA upstream 50774 24442373 ~ 24443159 (+) True G128856
TU190152 lncRNA upstream 53401 24436038 ~ 24440532 (+) True G128841
TU190167 lncRNA upstream 58553 24435074 ~ 24435380 (+) True G128855
TU190188 lncRNA downstream 21663 24524527 ~ 24525054 (+) True G128863
TU190464 lncRNA downstream 161587 24664451 ~ 24728979 (+) True G129038
XR_006253143.1 lncRNA downstream 164620 24667484 ~ 24669844 (+) True LOC122362653
XR_006253144.1 lncRNA downstream 232323 24735187 ~ 24737012 (+) True LOC122362654
TU190615 lncRNA downstream 336198 24839062 ~ 24856231 (+) True G129115
XM_043216759.1 mRNA upstream 5012 24474237 ~ 24488921 (+) False nr1h4
XM_043216758.1 mRNA upstream 5012 24476351 ~ 24488921 (+) False nr1h4
XM_043216760.1 mRNA upstream 5012 24478592 ~ 24488921 (+) True nr1h4
XM_043264074.1 mRNA upstream 20982 24460916 ~ 24472951 (+) True slc17a8
XM_043264268.1 mRNA upstream 143776 24338891 ~ 24350157 (+) True si:dkey-103i16.6
XM_043216515.1 mRNA downstream 9268 24512132 ~ 24522487 (+) True LOC122322916
XM_043264987.1 mRNA downstream 24347 24527211 ~ 24534508 (+) False ube2na
XM_043264986.1 mRNA downstream 24348 24527212 ~ 24534508 (+) True ube2na
XM_043264775.1 mRNA downstream 32432 24535296 ~ 24549380 (+) False nudt4a
XM_043264774.1 mRNA downstream 32434 24535298 ~ 24549380 (+) True nudt4a
TU190171 other upstream 36373 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 757087 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 914131 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 2055254 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 2086951 22400974 ~ 22406982 (+) True LOC122363143
TU190455 other downstream 80981 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 492907 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 791879 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 791879 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 843541 25346405 ~ 25348594 (+) True mt2

Expression Profile