RNA id: XM_043216515.1


Basic Information

Item Value
RNA id XM_043216515.1
length 3321
RNA type mRNA
GC content 0.40
exon number 17
gene id LOC122322916
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24512132 ~ 24522487 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGGTGGACTGGCCTGTTTGGTCTGCTCTGCTCTGAGCTGCTGGTTTGGACTCATGCTGAGTACAGTTTACACCTGGTACCTGAAGACCCATCGAATAGAAAGAACCCAAGAACTGTTTGTGCGAGGCATGTATGAAGGAGCGTTTCTAGAACAGTCCATGTTGCTAAATACACGTTTTAAAATCAGAAAGAGaatcaaggaaaaaaaatgTGCAGAAGAAACCATCCAAGTGTTTCTGTGTGCAACGATGTGGCACGAGACCTATGATGAAATGATGAAGATAATCATCTCTATGTTCAGGCTCGATAAATACAGACCCAAGACGGACAAACATAGTGATGTTGAGTTTgaattccatattttttttgatgatgctTTCAAGGATGTTGATAGTGGAAGACATGCAAATGAATATGCTGAAATTCTTGTGGATGTAATTAAAGAAGTTTACAGCATTTTTAGTGAAGAGGATCCCTGTATATTCAAGGAAAAGGCAGCACTACCACATCAGAAAATCATAGACACCCCTTATGGGGGTCGACTGGAATACACTCTGCCTAAAGGCAATTTGATGATGGTTCACCTCAAAAACAAGACACTTATCCGCCACAAAAAAAGATGGTCGCAGATAATGTACTTATATTACATTCTTGGCTGGAGACTTAACAGACCGTACTTCGAGGAATTTGAAAGAACTGGAGGTAATGAACAGGATTCCCTTTTGGAGAGACTGAAGaaagagagggagaacaCATACATCTTGGCCCTGGATGGAGATACTGATTTCCAGCCGTCTGCAGTCATGCTGTTAATCGACAGACTTAAACTCTACCCAGAAGTTGGCGCTGCCTGTGGCAGGATTCATCCAACAGGCACAGGACCTGTGGTATGGTATCAGAAGTTTGAATATGCGGTGGGCCACTGGCTGCAAAAGACTGCAGAGCACGTGTTCGGCTGTGTACTGTGCAGCCCTGGTTGTTTCAGTCTTTTCAGAGGAGCTGCACTCATGGACGACAACGTCATGAAGAGATACACAACCAAAGCCAGTGAAGCCAGCCACTATGTCCAGTATGATCAAGGTGAGGACCGCTGGCTGTGTACTCTGCTGCTGCAGCAGGGCTGGAGGGTGGAGTATAACGCAGCATCTGATGCCTACACCAACGCTCCACAGGATTTTAAAGAGTTCTATAACCAGCGCAGACGCTGGGGACCCTCTACCATGGCCAACACCATCGACCTCTTGGGCTCAGGAGGACTGACCTCTCAGAAAAACAGCTCTATCTCAAAACTTTACATCTTGTACCAGATTATCAGCATGGCAGCTTCAATCCTGGGTCCTGCCACTATCTGTCTCATGACATCAGGGGGCTTTGTGTTCATCTTAAATGTGAATGAAACTACAGCCCTAGCTTTGGCCATAGTGCCCCCTACTGTTTACCTCATCCTGTGCTTCAAACTCAAATCtgacacacaaattaaaattgcagCAGTCATGAGTGTATTCTATGCATTTCTCATGGCGGGAACAGTTCTCTCAGTCATAGGTAATTTAGTGAAGGAAAAGACTTTTCTCAACCCCAGTGGTCTGTTCCTCATCGGTATGGTGGTTTTGTACATCATCACGGCAGCTTTACACCCTCAGGAGTTCTCATTGATCAGCTATGGATTGTTATACTTCCTCTGCATTCCCAGTGGATATCTACTCTTAACTATTTACTCTATAGTCAACATGAACAATGTCACGTGGGGCACTCGTGAAACCGGCAGCCAGGCTAAAACTACTGCAGTCGATACCATCAAGAAGAAGATCATGAACGCCACATGCTGCAAATGTCCTTGCTTGGAATCTGAAGATCTGAGTGAGAAGATGTTACCAGCAGAAACTGAAAAGCCACATATTCCCTTGGAAACGCAGAGGGAATGTGAGTCCCAGCTTAGTCCTCAAATTCCAAAAGATTGGATTGAACATCTGCAGATGAAATCTTATGAATTTCCCTTGGATAAATCTGTACTCACTTTGgaTGAAACTAACTTCTGGAGAGATCTGCAGAAGAAATATCTGGAACCTCTTAAAGAGAATAAAGAACAACAGGAAAAAGTTGCTTGTGATCTGAAAGAACTTAGAAATAAGgttacatttgtctttttcttctgcAATGCACTTTGGCTGGTGGCAACTTTCTTCCTTCAGGCGATTGGTGTTTCTATAAAGATCCCAAAAATCTATCCCAATGGGACATATGACCCAACAGAAGTGTTTTCCCTAGATCCAATTGCACTGATGTTTCTACTGAGCTTTGTGTTATTACTGCTAATGCAGTTTGTTGCAATGCTTCATCACAGAATCTACACATTAATCCATTTTGTGGCATATGCTGACACAGAAATTAAATCTCACAGGAAGCAGTCAGACCAGATGCTTGAATCAAACCACCAGCCCGAGACGTCTGTGCCAGAGCCAGAGCCAGATCCAGATGCAGCCTTGTATTTTCAGAACCCCTCTGCAGATATAATGTCTTGAAAAGTCTTAAATTGAAGAATCTATTGAAAGTATCTGTGTTCACACTATTGCAATTCTTAAACAAGGAATTAAAGAAAACTGAGAAGTTTTTCACTAGGTCCAACTCTTGGTCCATTTAAAGGGGTCTGGGTTCTTTTAAAGAAGACACATTTTAAACCCAAATGCTCTGTTGTAGTGCATCAGGCCTAACaatttgaatataattatttgttaccatttactgtaaatacagataatatattgtaaaaatttaatgaaatggtCTTGCATTATGACTGaagtttttatggttttgtgtGAATACTTGTGtacttctctttctttcagttttttatgctacaaataattatttgatttttttatgtgatgtaaaataaaacattctagAAGAGGAAAAACATAAGCATTAATACTATAAAACAAAACGCTTATAGATGTCAGTTgtgtgctaaataaaatataacaataaaccGGGACAAATATCTcagacattttttatattttttaaagtactaGGCTAagttacatattaataatagtaagtaATTGTGTCcgtgtacatttttcttttaaccaTGCGAGACAGTTATACATAACATAATAACTATAGCTTAAAAATAGTAACTTTAGAAACTAACTTTCACTAATAAGTTAACAAAAGTGATATAGGCCAgtgcttaaagggttagttcacccaaaagtaaaacaaacctcatgttgttccaaacccataagaccttctaTCATCTTTGGAATTATATTTCTGATAATCTCAGAAAACCATACGACCCTCAGTAG

Function

GO: NA

KEGG:

id description
K00698 CHS1; chitin synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190172 lncRNA upstream 53198 24458719 ~ 24458934 (+) True G128859
TU190169 lncRNA upstream 66933 24444502 ~ 24445199 (+) True G128857
TU190168 lncRNA upstream 68973 24442373 ~ 24443159 (+) True G128856
TU190152 lncRNA upstream 71600 24436038 ~ 24440532 (+) True G128841
TU190167 lncRNA upstream 76752 24435074 ~ 24435380 (+) True G128855
TU190188 lncRNA downstream 2040 24524527 ~ 24525054 (+) True G128863
TU190464 lncRNA downstream 141964 24664451 ~ 24728979 (+) True G129038
XR_006253143.1 lncRNA downstream 144997 24667484 ~ 24669844 (+) True LOC122362653
XR_006253144.1 lncRNA downstream 212700 24735187 ~ 24737012 (+) True LOC122362654
TU190615 lncRNA downstream 316575 24839062 ~ 24856231 (+) True G129115
XM_043216514.1 mRNA upstream 9268 24493933 ~ 24502864 (+) True LOC122322915
XM_043216759.1 mRNA upstream 23211 24474237 ~ 24488921 (+) False nr1h4
XM_043216758.1 mRNA upstream 23211 24476351 ~ 24488921 (+) False nr1h4
XM_043216760.1 mRNA upstream 23211 24478592 ~ 24488921 (+) True nr1h4
XM_043264074.1 mRNA upstream 39181 24460916 ~ 24472951 (+) True slc17a8
XM_043264987.1 mRNA downstream 4724 24527211 ~ 24534508 (+) False ube2na
XM_043264986.1 mRNA downstream 4725 24527212 ~ 24534508 (+) True ube2na
XM_043264775.1 mRNA downstream 12809 24535296 ~ 24549380 (+) False nudt4a
XM_043264774.1 mRNA downstream 12811 24535298 ~ 24549380 (+) True nudt4a
XM_043264711.1 mRNA downstream 27945 24550432 ~ 24570221 (+) True eea1
TU190171 other upstream 54572 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 775286 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 932330 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 2073453 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 2105150 22400974 ~ 22406982 (+) True LOC122363143
TU190455 other downstream 61358 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 473284 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 772256 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 772256 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 823918 25346405 ~ 25348594 (+) True mt2

Expression Profile