RNA id: XM_043216543.1


Basic Information

Item Value
RNA id XM_043216543.1
length 4981
RNA type mRNA
GC content 0.44
exon number 20
gene id b4galnt3b
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20259769 ~ 20278496 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACCTGTGCGCGCGGGACTCTCGCGGACGCCGAATCACGGCGAAGGAGACGCGACGCGAGGTCGACTTTTCCCACCGGCTCCGAACCCGGGAGCGCGCGCGTCGATGACCCGACTCGCGGCGGTTGGCGACTTCTGCGATCCACACGGAGCCCGGAGCGCGTGAAAGGATGATGCTCAACTTTTTCCCGGTGCGGAAATTCAAGCGGCACGGCAGATATATTGTGTTCGGGGCGGTGCTGATGGTCGCGTTACTCGCGGCTTATCTGGAGTTCATGGCCATGAACGAGTGGAGCAGCCCCGgTGTAACCGTCCACAGTGAAAACATCGCCTGGGCTGCTCGACATGCGGCTAACATTTTTGAAGATCGCATCGGCGACGATAAACATAAAGACAACTGGACACCAAAAAACACTCGACAGACATGGAGGGTGGAGTATAAAGGAATGGCAAATCTTCACATATTTGAGGACTGGTGTGGCACGTCTGTATCTCAACTGCGGAAGAATCTGCATTATCCTTTATATCCCCACACTCGTACAACTGTAAAGAAACTTGCTGTTTCACCCAGATGGACCAATTATGGGCTCAGGATATTTGGATACATACATCCTTATACTGATGGTGACTTTCTGTTTGCAGTGGCGTCTGATGATAACAGCGAGTTCTGGCTCAGTGACGATGAAAATCCTGACAATCTGAAGCTCCGTGCTTACGTCGGAAAGACAGGCAGAGAATGGACTGCTCCGGGGGAATATGGGAAATACGCCAGTCAGATATCAGATCTCATTTCtctgcaaaagaacaataaatatttctttgagCTTatccacaaacaaaacaataaaggaACGGATCATGTGGAGGTTGCGTGGCAACTCAAACAGATGGGGAGTGGATTTTCAATCATCGATTCCAAGTTCATCTCCCTCTAcagcaatgagtcgtcactgaagacagCAGATGTCAATGACATTCCTCAGACTTTTGCCAGTCATGTGACTCCGCCCCAGAGGTCTTCTGAGACTCCGCCCCACGGAGCAGACATACTGAGAACAGATCCACGTGACTCGTTTCATCGGCtTCCATTATTGGACAGGACGCGTTTGCAGGGAGTTTTACCTGACTGTATTTATAACCCCAGCTACATCATAAAGGGATATCCTCTAATGCGCTACCAGGGCCTGCAGTTTGTGCATCTCACGTACGTGTATCCTAATGACTACACACGGCTCACACACATGGAGagtgaaaacaaatgtttctaCCGTGGGAATCCATACTACATGGAAAGaTACGGCTTCTCAAACTACATTCAGCTGGATCTGCCTGAAAGTGAGGAGACGGTGATCAAATACAAAGGAGATGGCATGATGGGCAGAGGTGAAGATGAGGGCTTTCAGAAAGCTGAAAAGTatgaggaggagaagaaaatgaaatttatgGAGCAGAACAAAGTTCTCCCGGATTATGGAGATGATTTTGATGATTATTCAATGCAGAGACGCCGTAAGCTGTTTTCTGTCCAGAAACATGGCATAatcagaaagaaaaggaaagacgGGGGGCTAGACAACAGATTTCAGCAGATGGACCAAGACAACCAACCCAAGGTACTCCAAAAACCTCCTGAAGAACCACAGATCCACCCAGAGGAACCACAGCAGCAAccaagaaagaagaagaaaaggagacgtcctgaacaaaaccagcagGACCAACACTACCTCCAAAACCCACCTTCTGAGGTGAAGAACTATgaccaaagaaaagaaaaagactcCCAAAGGTTTCAGAATAACATGGAGAAGATGCCAGATCAGCAGAATCCAGCTCATAGAGAGGATCGCCTGAGGTCAGAGGTGAAACAACAAGTGGACCAATCCCTTAATCAAGATGGTAGAATTGAGCCACTTAAAGCCAAATACCTCAACAGTAGTGATGGAAATCCAAATCTTGGTGCTGCTAGAGATAGAAATATGCCTTTGGAGAACATACGAGAAGCCAGTGAGTTGAAGCAAAGATCAGTGACCAATTCTGTCATGTTTCATGAGGTTCATAGCGAACGTCATGACCTTGTGAATCGGATGGGTAATCGAAAAGTCCATCTAGGAGAAGCTCCCAAGACCTCATTAGATGAGGTGAAAGTAAAGACGACCAAGCTGAAGAACACTGCAGATGAACTGCCATCCTTGAACGGCAATGAAGTCAAAGCTGAACCGGTGAAGAAGCTCAAACACCCAAAACATAAAGCGGATGAAGCGGTGCATGTTTTGCAGGACAACCCCAAAAAGGCTATAATAGATGATAACAATATTCCCATCATGCGCAAAAGTGGGGCTCATCGTCAAATTACCCAACGTCCACACCAAAACTCATCGCATAACGAGACCAATGAGCGTGAAGCGATGGTCATCGAGGCTCCATCTGACAAAGAATATAATGCGATACATGTAGAAGAGGTTGAAGATAGAGGAGACGAAGAAGACACTTGGGTGAATCAGGGTTTCTCGGAGGAAGAAGACTACGACCTCCTCAACAAGGCTGTGTTTGACGTGGAAGTCAAGTGGTCTCAGACGTTCCAGGCCAAACTCCTAGATCTGCATGCCTTGCGCTCCGACTGGATCGATCTGAAGTGTAATGTGTCTGGAAACCTGCTGCTTGAGGAATCAGAAGCATTGTCTGTTGTGGAAGCTTACATGAAGAAACTAAACAAGAAATTTCCAAGGCAGTTCTCTCTAGAGCGAATTGTGAACATTGAGAAGAAGCCTGATTATAATCGTGGCAATAGATACCTACTGGAACTGGACCTGCAGGAGGCTTCAGGACGCCACCTGCGCCTGGTTCAGTACGTCTACATGAAAAGAACCGAAGGCCGTTCTTACAAAAAACTAAAGGCTCTGGACACAGAACTTAAACTTTGCAATCCATACAGCTTCTACTGGAAACCAACTGCCACTGTCCACTTCATCATCCCAGTAAAGAACCAGGCCCGTTGGGTGCAGCAGTTTATTTCAGACATGGAGGAGATGTACCGCACCACTGGAGATCAAAACTTCAACGTCATCATTACTGACTATGAAAGCACTGATATGAACATAGAACAAGCGCTACAGAACTCTTATTTACCCAGGTATCAGTACCTCAGGTTAAGTGGAAACTTTGAGAGATCAGCAGGACTGCAGGCAGGAATAGACCTCATTTCTgATGATCACAGCATTGTGTTTCTTTGTGATCTGCACATTCATTTTCCTCCTGGCTTCATTGACACTGTGAGAAAACACTGTGTGGAAAAACACATGGCCTTCGCTCCAATAGTCATGAGATTGAACTGTGGTGCTACACCCCTGGAGCCAGATGGTTATTGGGAGGTCAATGGCTTTGGTCTTCTGGGCATTTATAAATCAGACCTGGACTCCATTGGAGGCATGAACACACAAGAATTCACTGACCGCTGGGGCGGAGAGGACTGGGAACTACTGGACAGGATCCTTCAGGGTGGGCTGGAGGTGGAACGACTCTACCTGAGGAACTTCTTCCATCACTTTCACTCGAAGCGTGGAATGTGGAACCGCCAGACGCTGCACAACACGTAAACATGTCCACAGTCTCGCCGCTGCTGATCAGCCGTTACCATGGCACTTTAAACCTCAGGACATTCCAGATGTGCTCCAGATCACATCTGACCGAAGGTGAATGTGAGGTGATCGTTTaatggaaacacacacagagactcagGACAAAGACGACTGTGATGTTTGGCTTGAAGATGAGATGTTGCATCCAGATCTCTCCAGTTCATTTCCAAAGTTGGAATGTTCTCCAAAGATtgctatcaaaaaaaaaataacttcaaagGAACTTATGAAAGCTATCGATGGCTTAAGTTAttgatgttgttattgttgtcaCTTCCAGGTCAATAAAATGACCTCATGTTCAATGAGATGTATATACtgagaaaatgtgtatttattcagGTATGTGAGTGTCTCGGGTGAGGGTTGACTTTGCACACTGTTACGTATGTTTTATGCTGTGCGCCCTGTTTAGTGGCCAAAACCAAAGAGATGTGCAATATTCACAGAGCCTGTTGGTCTAAGAAAGTCAATGATTTCAGGTTGTGTTTAAGAACATGTCTTGGCCATATCATCcccaaaatacaaaagaaaagaaaggaatagtttttagttgttttcacAGAAGTTAAGCACACTGTTCTCCCAATTTCTCATTTCTGTAATGCAGTCCAATAGCCATATTAAATGTGCACGTCATGGTAGCACTGCTCTTTATGccgatttaaaaataaaacaatgttatttttactataatacaATACATGACAAATTTTGATACGATGTGCTTAATTGGCATTTAACATCCTGTCACAGTACCTTAATTTAAGGATGAATTATTATGCAAAATGGAATGAATTTATGAAATGACCTAGCCATGTTTTCTGCCATATATGCCATTTTGTAGTGGTGTTGAAGGGGTTTTAAAGCTCTTTTAGTACAAATGAAAGGGTTTTCCAGCTTCGTGACACATTCCAGTGATGAAGAAAATCTTGAATTAGACTGATTCAACCCTGTACAGTATTACTTAAAACAATCCTAATATTCATCAAACACACGATCATTTTCGGTTCTTGTTTTCCCAGTGAAAACTAACAAGACATGTTCACTCAGAAGTGCCTTCTGTTGTATGTGACTGTGAGGAAATCTGATTTTGCAAAGGTATTtgccgctttttttttttttctatacctTGTGGCTGGTTTGTTTTTTggtggactttttttttcttaaaagaatGTAATGAATTGTAGATCTGACCTTCACTTAATGTGTTACTTAACATTCAagtcgtttatttatttttccacatttttgtaAGCAGCAAAACGGAAATGACCTTCGACTCGTTTGTGCAGATCACCAgcaaccttaaaataaagtttcttcAGATTTCTCCATTAA

Function

GO:

id name namespace
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K09656 B4GALNT3; beta-1,4-N-acetylgalactosaminyltransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253191.1 lncRNA upstream 35185 20221304 ~ 20224584 (+) True LOC122363139
TU188681 lncRNA upstream 44538 20202748 ~ 20215231 (+) False G127766
TU188679 lncRNA upstream 48352 20202748 ~ 20211417 (+) True G127766
TU188509 lncRNA upstream 268133 19985741 ~ 19991636 (+) True G127663
TU188470 lncRNA upstream 334967 19781765 ~ 19924802 (+) True G127637
TU188708 lncRNA downstream 46834 20325330 ~ 20383758 (+) True G127785
TU188734 lncRNA downstream 95358 20373854 ~ 20375835 (+) True G127800
TU188810 lncRNA downstream 283587 20562083 ~ 20572310 (+) True G127860
TU188825 lncRNA downstream 307555 20586051 ~ 20588863 (+) True G127873
TU188827 lncRNA downstream 318711 20597207 ~ 20600519 (+) False terb1
XM_043264422.1 mRNA upstream 3322 20250402 ~ 20256447 (+) False fkbp4
XM_043264421.1 mRNA upstream 3322 20250403 ~ 20256447 (+) True fkbp4
XM_043264419.1 mRNA upstream 20968 20230154 ~ 20238801 (+) True wash1
XM_043263955.1 mRNA upstream 61954 20160121 ~ 20197815 (+) True ptprq
XM_043263956.1 mRNA upstream 99591 20155466 ~ 20160178 (+) True LOC122362491
XM_043264561.1 mRNA downstream 7969 20286465 ~ 20311133 (+) True c2cd5
XM_043264562.1 mRNA downstream 7969 20286465 ~ 20311133 (+) False c2cd5
XM_043264564.1 mRNA downstream 7969 20286465 ~ 20311133 (+) False c2cd5
XM_043264563.1 mRNA downstream 7969 20286465 ~ 20311133 (+) False c2cd5
XM_043264565.1 mRNA downstream 7969 20286465 ~ 20311133 (+) False c2cd5
TU188630 other upstream 172188 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 245983 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1418234 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1477610 18777768 ~ 18782159 (+) True G127500
TU188208 other upstream 1698159 18560366 ~ 18561610 (+) False G127456
TU188799 other downstream 269331 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 272652 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2122478 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 2156310 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 3178604 23457100 ~ 23579802 (+) False cdh13

Expression Profile