RNA id: XM_043216548.1


Basic Information

Item Value
RNA id XM_043216548.1
length 4301
RNA type mRNA
GC content 0.46
exon number 22
gene id nup93
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25349481 ~ 25371467 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATCAGCGCGCGCTCAATTCAACCCGGGAGTTCACGAGGGGTTGTGTTTAGCATAGCGGCTAAAGTGGAAATTATCCTATTACAGCCGCTTTAAGGATTCACATTCTGGGAGGTGGAGCAGGAGCTGCACATGGATACTGAGGGCTTCGGGGAACTCCTGCAGCAGGCAGAACAGCTTGCGGCAGAGACTGAGGCCGTGTCCGAGCTGCCCCATGTTGAGCGAAACCTACAGGAGATCCAGCAGGCAGGAGAGCGTCTACGTTCCCGTACTCTCACCAGAACCTCTCAAGACACAGCTGACGTAAAAGCcTCCATCCTCTTGGGTTCTCGGGGTCTTGACATCTTCCATATCTCCCAGCGTCTTGAGAGTCTCAGTGCTGCCACTACATTTGAGCCTCTTGAGCCAGTCAAGGACACTGATATTCAGGGCTTTCTGAAGAACGAGAGAGACAATGCACTGCTGTCAGCCATCGAGGAATCACGCCGCAGGACATTTCTGCTGGCGGAGGAGTACCACAGAGACTCTATGTTGGTGCAGTGGGAGCAGGTGAAGCAGAGAGTGTTGCACACCCTGCTGGGAGCTGGAGAGGATGCACTGGACTTCAGCCAGGAAGTGGAGCCCAGTTTTGTGAGTGAGGTCGGAATACCAGGACGCAGTGCACTGGACAGTGTAGAAGTTGCCTACAGCCGGCAGATCTATATCTTCAATGAGAAGATAGTAAATGGACATCTTCAACCCAACCTGGGAGATCTCTGTGCCTCAGTAGCCGAAAGCCTGGATGATAAGAACGTGTCAGACATGTGGCTCATGGTGAAGCAGATGACAGACGTTCTGTTGGTGCCAGCAAAGGACACGCTGAAGTGCAGAGTGTCTGTGGACATGCAGATGGCCTTCGTCAGACAAGCCCTGCAGTTTCTGGAGAACAGCTATAAAAATTACACGATGGTCACTGTATTTGGGAATCTGCACCAGGCTCAGCTGGGTGGAGTACCTGGCACTTATCAGCTTGTATGCAGCTTCCTAAACATCAAGCTGCCGACTCCACTGCCAGGCATGCAGGACGGCGAGGTGGAGGGACATCCAGTGTGGGCTCTGATCTATTTCTGCCTGCGTTGCGGAGACTTGTCTGCCGCCATGCAGGTGGTGAACAGGGCACAGCATCAGCTGGGCGACTTTAAGATTTGGTTTCAGGAATACATGAACAGCCCCGACCGACGTTTGTCTCCTGTCACAGAGAATAAACTACGACTTCATTACCGACGCGTGCTGAGGAATAGCGCTGACCCCTACAAGCGTGCAGTTTACTGCCTCATCGGCAAATGCGACATCGGCGACAATCATGGAGAGGTGGCCGATAAAACAGAAGACTACCTGTGGCTCAAGCTGAATCAAGTATGTTTTGATGAGGATGGCAGCAGTTCCCCTCAGGACAGAATGACTCTAGCCCAACTTCAGAAACAGCTACTGGAGGACTATGGTGAGTCCCATTTCTCAGCCAGCCACCAGCCATTCCTGTACTTCCAGGTGCTTTTCCTGACTGCACAGTTTGAGGCGGCCATAGCGTTCCTTTTCCGAGTGGAGCGTCTGCGCAGCCATGCTGTTCACGTAGCTCTGGTGCTGTATGAACTCAAACTGCTGCTCAAATCATCGGGCCAGAGCGCTCAGCTATTGAGTCAAGAGGCTGGAGATCCACCAATGGTGCGACGGCTCAACTTCATTAGGCTGCTTATGCTCTACACCCGCAAGTTTGAGTCCACAGACCCACGAGAAGCTCTGCAGTACTTCTACTTTCTCCGGAATGAGAAGGACAGTCAAGGAGAAAACATGTTCATGCGCTGTGTCAGCGAGCTAGTCATCGAGAGTCGGGAGTTTGATATGCTTCTTGGAAGACTTGAAAAAGATGGAAGCAGAAAGCCCGGCGTGATCGACAAGTTTGCCGGAGACACGCGGGCCATCATTACCAAGGTGGCCTCGGAGGCAGAGAACAAGGGCTTGTTTGAGGAGGCCGTCAAACTGTACGAGTTAGCCAAGAATGCTGATAAGGTTCTGGAGCTGATGAACAAATTGTTGAGTCCTGTTATCGCTCAAGTCAGCGAGCCCCAGTCTAACAAAGAGCGACTCAAAAACATGGCGGTGGCTATTGCTGAACGGTACCGTACTAATGGTATAGCTGGGGAGAAGTCTGTGGACAGCACCTTCTACTTGCTCCTGGACCTCATGACGTTTTTTGATGAGTACCACGCCGGACACATAGACCGAGCCTACGATGTGATTGAGAGGCTAAAGCTGGTTCCTTTAAGTCAGGACAGTGTGGAGGAGCGGGTTGCAGCATTCAGAAACTTCAGTGACGAGATAAGGCACAATTTATCAGAGGTTCTGCTGGCCACAATGAATATCCTGTTTACACAGTACAAGCGTCTAAAGGGGGCTGCAGCAGGTACGCCAGGAAGACCTCAGCGTACCCTAGAGGACAGAGACATGCTGCTGCGCAGTCAAGCCCGGGCTCTGATCACGTTTGCGGGAATGATTCCGTATCGCATGGCTGGAGATACCAATGCCAGACTGGTTCAGATGGAGGTCCTAATGAACTGAAACTCCCCCTTCTCCCTTCTCCAGCAGCTCATTTTCATTGTCCCCATTCCATCATTACTTTTGTCAacttatatttgtattttttcccattatttgaaataataaaaaaaatgaaattcagttcaattttgtttcattttcttttcttatgtcataaaccttttttcattttgatgtgaCATTTTGTCttgcattttctgtttatttgatttcagttgcatacgtttcattttaaaagctataGTCTCTTTTAGAAGCTGTATGAAATTAATCAAATGCACTATTGCCTGCTATTCTTATTTcgtataattaaatatcaatcCAATATGAAATCCGGTGCAAAAAATCAACTTGTACATCTCATGACAATAGTATCCTTTATTATGTTGTTAACAGTAAGATTAACCACTTTGGTGGCAGCCATCATGTTGCTGTATATAAAGGGTTCTCTTACTCTCCGGGGCCACAAAAAGCACAGAAGTGAGATCTTTATTTAGTGACTATATTTTACTAGTTATgagtttttctgaaatattttattgtctACACGTTGCTGATGGACTTTGTGtagtgcaaaacaaaaactactgaTTTGTGAGCAACTGTTTCTTTTAATAGAAGAACTTTACAATTGGTCCccgttaatgcattaactaacaatgagcaatacatttgttacagcatttattcatacattaaaaatacaactcTTCGTTATTAGTTCAGGtccattaaataacattaaaatacaacttttgattttaatattgaaaacaacaacaaaagttttgcaagtattttttttgttcatcttcagtaTATGTTAACTTAATGTAATTATCTAAAGCCTTTTAACATAAATTACAAGATCAGTTCATTCACAAATCAATCCGTATCACAAAGCTTCAAAACGTGGGACgcctttattatattttatttctctgttttgGTTGGCTCAtactttattcattaaaatgcatattgtgTAACACAAACCTACTGTACAAACAAGTGGCCGGACAGGGAGTGTTTAGAGCCCTTTCTGAGAGCAGGAATGTGTGTGACATTGATTCTCTCAGCAGATGGTGGGTTATGGAGGAAATGCCCGTAGAGCACACAGATGGACGTGTTGGCTTTGTCACGGCCGGCTGCAGTGTCTGCTCCAGCTCCCTCTAAGCTCTGCTTTGCATTTTTAACCGTTAGCATCTGGAgctgctgcatttattagagTGCACTGTCCTAAATTCAAGGTACTGGATGCACAACAATCAGGTTTCAGGGTTTCAACTTTATTTCACCCTTTCATCAAAAGCTCTCAACAAAAGACAAATCTGGTCctcacagaatttttttttttttattgcaagtCGTCCAGCATCAGTACACCACTAAGTCAAATAGGAACTCTGTTAGGTTTGGACCCTGGAGAAGAAGATCAGGAGGAGAAAGATTCGTCTTCACACCTCCTGGACtggtgtgtgaggtgtgtgtgctGCAGCTGGTGTTGTGAATCAGGCCGATGTCACACGTCCGCGATAACCCGGCTATTTCACAACACCAGGGTGGCACCACACCGCTGCCAACAAAGGAGCTCTTTCTAAACAAGTCATCCATCACCTTTACAGAACTTAACAGAATGTACAGTAATGTATTATcctcattaaaaaatacagtggttctttgaaataaaacttttttttactaaaa

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0051292 nuclear pore complex assembly biological_process
GO:0051028 mRNA transport biological_process
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0034399 nuclear periphery cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG:

id description
K14309 NUP93, NIC96; nuclear pore complex protein Nup93

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190833 lncRNA upstream 443 25348756 ~ 25349038 (+) True G129262
TU190829 lncRNA upstream 2201 25346405 ~ 25347280 (+) False mt2
TU190813 lncRNA upstream 60944 25288143 ~ 25288537 (+) True G129246
TU190642 lncRNA upstream 207622 25063454 ~ 25141859 (+) True G129135
XR_006253142.1 lncRNA upstream 299876 25034118 ~ 25049605 (+) False LOC122362644
TU190852 lncRNA downstream 68581 25440048 ~ 25442441 (+) True G129270
TU191004 lncRNA downstream 291030 25662497 ~ 25663585 (+) True G129360
TU191012 lncRNA downstream 303604 25675071 ~ 25675310 (+) True G129368
TU191014 lncRNA downstream 305090 25676557 ~ 25676861 (+) True G129370
TU191118 lncRNA downstream 595549 25967016 ~ 26221023 (+) True G129435
XM_043265145.1 mRNA upstream 2294 25346392 ~ 25347187 (+) False mt2
XM_043264601.1 mRNA upstream 15476 25322656 ~ 25334005 (+) True phaf1
XM_043264604.1 mRNA upstream 15476 25322656 ~ 25334005 (+) False phaf1
XM_043264603.1 mRNA upstream 15476 25322656 ~ 25334005 (+) False phaf1
XM_043264615.1 mRNA upstream 39741 25294743 ~ 25309740 (+) True kiaa0513
XM_043216766.1 mRNA downstream 238 25371705 ~ 25381143 (+) True slc12a3
XM_043216767.1 mRNA downstream 238 25371705 ~ 25381143 (+) False slc12a3
XM_043216547.1 mRNA downstream 10241 25381708 ~ 25387860 (+) True herpud1
XM_043263913.1 mRNA downstream 17567 25389034 ~ 25394241 (+) True LOC122362468
XM_043264785.1 mRNA downstream 23415 25394882 ~ 25413257 (+) True nlrc5
TU190830 other upstream 887 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 41416 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 41416 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 353531 24995771 ~ 24995950 (+) True LOC122323238
TU190455 other upstream 761436 24583845 ~ 24588045 (+) False LOC122323037
unassigned_transcript_2193 other downstream 525956 25897423 ~ 25897505 (+) True trnal-cag_32
TU191105 other downstream 549800 25921267 ~ 26174156 (+) True G129424
TU191117 other downstream 580931 25952398 ~ 25953772 (+) False slc24a1
TU191156 other downstream 857627 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 932420 26303887 ~ 26306806 (+) True G129468

Expression Profile