RNA id: XM_043216559.1


Basic Information

Item Value
RNA id XM_043216559.1
length 2155
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC122322950
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25897542 ~ 25902915 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAAAGAGACCAAAGGCCGTTTCATACGCCATGAGTATAGCACTGAAACGACTAAACGATCAAAAATACTAGACATAGACGTTTTACATCTGGTCGCTGCAGACAAGAGGACAAAGATGAGTAAGTGACTGCAGTTCTAAAAAGACTTGTGCAGAAATGGCGGATTTTCCTGGGAAGGTCAACACTCAGACCAGCTCCAGTGAAACTCAGACAAGTTATGGAGTCCCAGCAAGGGTGGACATGGACTTCATCAAGAGCATTCCTGGTATCCTGCTTATAGCTGAGATTTTTGTTGGATTACTGGTGTGGTCGCTGATCGCCAGtaccggcttcacctcagttcCTGCTTACGGCTGGGTGCTGTTTGTCAGCGTGACACTGTGGCTCCTCAGCATCGCCCTGTTTGTCGTTCTGCTGTTGAGGTTTTATCAGAATCTACCTTCGGTGCCTTGGCCTTTAGTGCTCATGGTGTTCTACGTAGTTGCAGCCGTTCTATACGTGACTGCCTTTTTGGCTGATGCGGTAACTGTCCCGCCCCAGTTTTTCCCCTGGCACGGTCATCTGGGAGCTTCTGCGttcTTTGCCATAGTGGTGACTCTGTTATATGGAGCTAGCAGCTACTTTGCCTATTTGGACTGGAGGGGTGAAGGGCAAAATGCAGCGGCGAGTACAGTGCCCGTGTAGACCGTCCGAGTGACAACACATAGATATTACTCAGATTTTTTGGCGCTGTGAAAGTCCTCTTCAGGAACGTTCAACAACCCTTCTGTATAATGGTGCCCAGCATATTTGCTTGTTGTTTTATAACATGgacattgtgtgtgtatgcttaTGTGCAGCAGGCCTGGGGTCAGTcagatttgtttaaagaaagaaattcattatttttctcagcaaggatgcattgaattgatcaaaagtgacagttaacACGCTTAAGTTTACAAaggatttaatattttaaaaaatactgggATGGGATGCGATCGGGAAAGGTCCGGAAACTGGGATGCGAAATCGTGATACCCGAAGTACAATGGTGCTGTATGTTGGCACACTGCCCACTGAGCTTTTAGCACCTAGACACTCTATtcttaattgcaataatattttacaattatacttttttttggtaTGTTTACGGTGGCCGAGAGAGCTTAATGTGCAACAGCTTCTGAAAGCACCATtgcaaatggaaatggaaaaagcACCATTAAATCAAGAAAACTTAATCAGTTATACAAATGCTTACAACACAATGAAATGTGCAAGTAGCACAGACTGCAATATAGTTAcccaaagaaaatgaaaatgaaccacgttttttgttttgtttggtatGTTGATTGCCATTTGGATAACTACAGTTGTACAAATAACACGGTTAAACTATGGTTAGTGTAGTAAACCCATGGTAGAGCTTTATATAGTTAGCATGGTTTAACTAcagtattgtatttatatattcagtgtattaattaattaactttaataGTAAAAGCATAGACTAAAGCTGTAAAAGTAATTTGGCCAGGCTTTCACAATTAAAGTAATTTCTGtcaaagtgctgtcaaatgattaactgcatccaaaatactaatatataaatacacacatacattatacatatattgcaagtatttgcatgtatttacatttagatatttatattcatataatgtatatgtgaaTACGTTACATATATAaccataacatttttcttaaatttatacatacatgagtgtgtatttacaaattcacttaataaatatacatactatGCAACCAAAAGTTTTATTATGAGTGCAtctaattgtttgacagcatataaacatatatttgtttgtgttgtgaGCATTTGTAGCATATGTGTTGTCAAACTATTTGCAGTGTGTTGAGCACACTAGGCCACCgtatatgtttgatcaaataaatccagcctGGGTAAGCATTAAGcgataacaaaaacaaaaacaaaaaaaaaaaaaacttaccagCCCCAACATttaacatccttttttttttctaagctaCACTGAATGACTTGagcaaatatgtatttaatggTGAGGTTCTTGCATTACTTTAAAGTTGCTTAATGCTTAAGAATGCAATTGACAGTTTtgagcattaaaatgttttgctaaaatataa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191014 lncRNA upstream 220690 25676557 ~ 25676861 (+) True G129370
TU191012 lncRNA upstream 222241 25675071 ~ 25675310 (+) True G129368
TU191004 lncRNA upstream 233966 25662497 ~ 25663585 (+) True G129360
TU190852 lncRNA upstream 455110 25440048 ~ 25442441 (+) True G129270
TU190833 lncRNA upstream 548513 25348756 ~ 25349038 (+) True G129262
TU191118 lncRNA downstream 64101 25967016 ~ 26221023 (+) True G129435
TU191132 lncRNA downstream 253992 26156907 ~ 26158502 (+) True G129438
TU191110 lncRNA downstream 257110 26160025 ~ 26160419 (+) True G129427
TU191140 lncRNA downstream 310015 26212930 ~ 26213344 (+) True G129446
TU191154 lncRNA downstream 326179 26229094 ~ 26284050 (+) True G129454
XM_043264348.1 mRNA upstream 21819 25854441 ~ 25875732 (+) True st3gal2
XM_043264347.1 mRNA upstream 21819 25854441 ~ 25875732 (+) False st3gal2
XM_043264349.1 mRNA upstream 21819 25863125 ~ 25875732 (+) False st3gal2
XM_043264932.1 mRNA upstream 93641 25792590 ~ 25803910 (+) True siah1
XM_043264798.1 mRNA downstream 4004 25906919 ~ 25920975 (+) True arih1
XM_043264335.1 mRNA downstream 37814 25940729 ~ 25943948 (+) True hacd3
XM_043264898.1 mRNA downstream 49415 25952330 ~ 25962581 (+) True slc24a1
XM_043264163.1 mRNA downstream 288089 26191004 ~ 26196388 (+) True LOC122362626
XM_043264250.1 mRNA downstream 398001 26300916 ~ 26303177 (+) True LOC122362692
unassigned_transcript_2193 other upstream 46 25897423 ~ 25897505 (+) True trnal-cag_32
TU190830 other upstream 548957 25346405 ~ 25348594 (+) True mt2
XR_006253170.1 other upstream 589486 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other upstream 589486 25294743 ~ 25308065 (+) False kiaa0513
XR_006246977.1 other upstream 901601 24995771 ~ 24995950 (+) True LOC122323238
TU191105 other downstream 18352 25921267 ~ 26174156 (+) True G129424
TU191117 other downstream 49483 25952398 ~ 25953772 (+) False slc24a1
TU191156 other downstream 326179 26229094 ~ 26332010 (+) False G129454
TU191172 other downstream 400972 26303887 ~ 26306806 (+) True G129468
TU191155 other downstream 427557 26330472 ~ 26332010 (+) False G129454

Expression Profile