RNA id: XM_043216572.1


Basic Information

Item Value
RNA id XM_043216572.1
length 1847
RNA type mRNA
GC content 0.50
exon number 14
gene id ttc38
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22016312 ~ 22026457 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACAGGCGGAAGCTCACACGTCTGTCTGTCATCGCCAAAGGAAAACAGGCTGCGAGACTGAACATGTCGAGTTTCCGAGATTGCATGGGAATCAGAAAGTCTGCCGCTGTCCACCAGCAGTAATGAGGCCTGCAAACTATACGACGCTATACTGTCTCagTACGTGACCTGGCGTAATAATGAGACGCTGGGAGGAATAGAAGGCTGTATTACGGCCATCAAAGCAGCAGACCCGGACTTTGTGATGGGTCACGTGATCTCTACTGGGCTGGAGTTGGTGGGAACAGGAAGTTCGGTCCTGCGGGACGAGAGATTGGCCGGCGCGGTGAGGAGGACCGTGGAGCTGGCCAGCGCTCAGGAGCTCACGCCTAGAGAGAGGAACCACGTGAAAGCCGTGGAGCTCTTCTCTAAAGGAGCCCTACATAAAGCCTGTGAGGTTTGGGAGGGTATTTTGGCGGATCACCCCACAGACATGCTGGCACTGAAGTTTGCCCATGATGGGTTCTTCTACCTGGGTGAACAGACTCAGATGAGGGACTCTGTGGTCAGGGTTCTGCCCCACTGGAAACCACATATGCCGTTCTACAGttatcttAAAGGCATGTATTCCTTTGGGCTTCTTGAGAACCGTTTGTATGATGAAGCtgaaaaaatggcaaaagagGCCCTGGCTCTGACCCCTGAGGACGGATGGAGTGTCCACGCTGTGGCTCATGTTCATGAGATGAAGGCAGAGATGGACAAGGGACTGAAGTTTATGGCCTCTACCGAGAAAGATTGGATGGTGTGTGACATGCTGGCGTGTCATAATTACTGGCACTGGGCTCTATATCACATTGAAAAgGGTAATTATGAATCAGCTTTGAAGATTTTTGATGAGCAGGTTTCTCGGCGCTGTGTGAAGTCTGGAGCCATGCTGGACGTCGTAGACTCTTGTTCGTTGCTCTACAGACTAGAGatggaggGTGTGAGCGTGAAGGATCGTTACCGAGAGCTGCTGCAGGTGACCCAGCCACATACAGAAGACCACACGTTACTTTTTAATGACCTGCACTTCCTCATGGCTTCCCTGGGCAGCAAGGAGACCGCCACCACTCAGCGCCTGCTGGAGAGTCTCCAGGAACTGGCTAAAGACCCAGCTGAGAACCATCAGCTGCAGCTAGCCGAGCGTGTGGGGCTGCCCATGTGTCAGGCTCTGCTGGAGTATGACCAGGGAAACTACAGCCAGGCCGTGGAGCTGCTCAAACCCATCAGAGACCGCTTTGTAGAGATAGGGGGCAGTGACGCACAGAGAGATGTTTTCAGTCAGCTCCTTATTCATGCTGCCATGAAGTCTGGAGACAAAGAACACCAACGATTTGCCagATGCATGCTGATCGAGAGAGACGCAGTGCGGCCAAACTCCCCGCTCACAGACCGGCTGATCCAGAGAGCCCACTCCTTGCATGTTTAAATTCAGACCCCATTCCTCGCATGGTTAACAGCCTGTTCTCTCTTGGTTTAATTACGGGGTGCTTTCCTAACACATTTAACTGTAGACATTAGATCAGAGAGCCCAAGAGTTTCCACCCGAAGAAAGTCTTGTGTTTAATGGGTTCGCTCCTCCAACAGTGTTAAACTGTTAGTCTGGTCTCTTACTCCTACGTCGCGAGACATAAACGAAATGGAAAGTCTTTGAAAAGATTTTCCTTAGCGCTACGTGTTAATCAAGTCCGAACAGTAGGCACCGAACAAATGATGGTGATTATTCAATGCTGTGTGcgttaaaaataaacttgcaaATATGCCTCCAGACTTTTGAATCtgtaatgaagaaataaacaattCCACAAGCTTTAcagacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246944.1 lncRNA upstream 181355 21694446 ~ 21835021 (+) True LOC122323089
TU189310 lncRNA upstream 374747 21638410 ~ 21641629 (+) True G128251
TU189266 lncRNA upstream 547823 21466778 ~ 21468553 (+) True G128216
TU189193 lncRNA upstream 850303 21165272 ~ 21166073 (+) True G128158
TU189192 lncRNA upstream 853625 21161886 ~ 21162751 (+) True G128157
TU189407 lncRNA downstream 7214 22033671 ~ 22068953 (+) True G128318
TU189419 lncRNA downstream 83016 22109473 ~ 22110458 (+) True G128329
XR_006253188.1 lncRNA downstream 361142 22387599 ~ 22388615 (+) True LOC122363071
TU189448 lncRNA downstream 383030 22409487 ~ 22411951 (+) False LOC122363143
TU189506 lncRNA downstream 508009 22534466 ~ 22535424 (+) True G128377
XM_043216627.1 mRNA upstream 920 21954303 ~ 22015456 (+) True mical3a
XM_043265069.1 mRNA upstream 93703 21920107 ~ 21922673 (+) True lepa
XM_043265070.1 mRNA upstream 93703 21920216 ~ 21922673 (+) False lepa
XM_043265071.1 mRNA upstream 94142 21920110 ~ 21922234 (+) False lepa
XM_043216790.1 mRNA upstream 334541 21656321 ~ 21681835 (+) True LOC122323126
XM_043264010.1 mRNA downstream 215015 22241472 ~ 22261969 (+) True LOC122362522
XM_043264964.1 mRNA downstream 348131 22374588 ~ 22399236 (+) True LOC122363070
XM_043264962.1 mRNA downstream 348131 22374588 ~ 22387052 (+) False LOC122363070
XM_043264963.1 mRNA downstream 348132 22374589 ~ 22387052 (+) False LOC122363070
XM_043265105.1 mRNA downstream 374487 22400944 ~ 22411957 (+) False LOC122363143
XR_006246928.1 other upstream 1459749 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 1467058 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 1928795 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 2002590 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 3234217 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 374517 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 408349 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 1430643 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 1698179 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 2423308 24449765 ~ 24457560 (+) True G128858

Expression Profile