RNA id: XM_043216593.1


Basic Information

Item Value
RNA id XM_043216593.1
length 1826
RNA type mRNA
GC content 0.45
exon number 4
gene id alx1
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24795815 ~ 24801103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttgaacaacaacaacaacaacagcaaaaaaaaaaaggttaaagtaaataacactaaaaaagaacaaagatgATATTTTCCGAGTTAAATGCAAATACTTATTTGTagtttaaatactatttttacaCAGTTTAACACTTAAAACAGCGCACTCAGATTTATCAGATAATAATCATTAGGGATATCCAAACACTGAAAGCGAAAGCAAGTGTAATTGTTTCATTTCGGGTCATCTCAGAGTTTCATAAATCTTATTTAGTGGCTGTGCATGCGCGTGGGTGGAGTTTCACCTTCTCCATATTCAGAAGTTGGGTGGCTGCTTGAAGCTCGCGCTCTTCGCCGTATAAAGAGAGGCCCTCGGTCTCTTTAAGACAAGACAAATTAACGACTTGTACAAATAATTGGCCGCATTGCTTCATTTTTTGACATCACTAAAACATTTATGGTGTCCGCTGACGCGCTTCATGCTTGAGACGAGGCCAGAGGACCATGATGGAGTACTTGAGCGACAAGTTCTCCTTGAAAAGTCAAGCGATTAAAGGCAGCGATTACTACATGGACCAAGTCATGGAGACTTTAGACAATGTGCAGTACTACAACAAGACATCACCTAAATGCGTGCAGGCCTTCTCGATGCAGAGCAATGATCAACACGCCACCATGGACAGATCGTCTCCGTGCGACAACCAAAATAGCGTGAATTACTGCGCTCCTAAAACCGAAGACAGCGGCCTTCACGCGATGGAGAACTGCTGCAGCATCAGAGTCTCCCCGGCCGCGGCCGGACCGGACAAGACGGACCTGGACGACATCGGAGAAAAATGCGACAGCAACGTGTCCAGCAGCAAGAAGAGACGCCATCGCACGACCTTCACGAGCGCTCAGCTGGAGGAACTAGAGAAGGTCTTCCAGAAAACCCATTACCCAGATGTTTACGTGAGAGAACAGCTGGCCATGAGAACAGAGCTCACGGAGGCCAGAGTTCAGgtatggTTCCAGAACAGAAGAGCCAAGTGGAGAAAGCGAGAAAGATACGGACAGATCCAGCAGGCCAAAAGCCACTTTGCAGCGACCTATGACATATCAATGCTGCCCCGGACGGACAGCTACTCACAGATTTCCAACAACTTATGGACGGGTCCCACTCCAGGCAGCTCTGTGGTCTCGTCCTGCATGATCCCGCGGGGTTCCCCTCCCTGCGTGACGTCTCCCTACCCCCACTCGCCGAGGGCCGCTGAGCACAGTTACGTGGGATTCCCCAATCACCAGCAAAATCAGTTTGGAATGTCTCTCAACAACTTCTTCGCCGATTCACTTCTGGCTCCTTCACCGAACAGTCACGCCGCGTTTGAGACCAAACCCGAGTTTGAGCGGCGGTCCTCCAGCATCGCTGTGCTGCGGATGAAGGCGAAGGAACATGCAGCCAACATATCTTGGACCGTGTGAACTCTGAACTTACTCTAATAGTCCTGATCTCAACAGTCTTTACCTATAACGGCACAGTTACCTTCatgaatttgttttcattttatttaatttttttattggaacaacAAAGATATCGGCCGTAATTAAGTTTTAAGTcgtttcagaaataatttaattaggaAACCTCTTGATTAAACAGTAGTGATTCTTATTTTGTCTTAGCATCTCTTGTTGTGAATATGAAGAACTACAGTATTATACGCTCATGACTTTGACAGAGATGTTATGGCTGACATACTAACACTATGTCTTTGTGCTTTGCAGCAAAGCTGTTAAATGCTCTCTAGCTGTGGCTAGTCTACAGTGCCACATGCAAAGgagcaattttttattttaag

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001755 neural crest cell migration biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09334 ALX1, CART1; ALX homeobox protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253144.1 lncRNA upstream 58803 24735187 ~ 24737012 (+) True LOC122362654
TU190464 lncRNA upstream 66836 24664451 ~ 24728979 (+) True G129038
XR_006253143.1 lncRNA upstream 125971 24667484 ~ 24669844 (+) True LOC122362653
TU190188 lncRNA upstream 270761 24524527 ~ 24525054 (+) True G128863
TU190172 lncRNA upstream 336881 24458719 ~ 24458934 (+) True G128859
TU190615 lncRNA downstream 37959 24839062 ~ 24856231 (+) True G129115
TU190628 lncRNA downstream 199627 25000730 ~ 25000930 (+) True G129127
TU190626 lncRNA downstream 212647 25013750 ~ 25016984 (+) True G129125
XR_006253142.1 lncRNA downstream 233015 25034118 ~ 25049605 (+) False LOC122362644
XR_006253141.1 lncRNA downstream 233015 25034118 ~ 25042184 (+) True LOC122362644
XM_043263884.1 mRNA upstream 2716 24769396 ~ 24793099 (+) True lrriq1
XM_043264192.1 mRNA upstream 44712 24744865 ~ 24751103 (+) True LOC122362648
XM_043264190.1 mRNA upstream 54455 24739025 ~ 24741360 (+) True LOC122362646
XM_043264191.1 mRNA upstream 111877 24677660 ~ 24683938 (+) True LOC122362647
XM_043264194.1 mRNA upstream 119966 24671802 ~ 24675849 (+) True LOC122362651
XM_043216493.1 mRNA downstream 35144 24836247 ~ 24840156 (+) True nts
XM_043264616.1 mRNA downstream 189480 24990583 ~ 24999270 (+) True eif4g2b
XM_043264198.1 mRNA downstream 204976 25006079 ~ 25008464 (+) True lyve1b
XM_043264199.1 mRNA downstream 204976 25006079 ~ 25008464 (+) False lyve1b
XM_043264439.1 mRNA downstream 208184 25009287 ~ 25013620 (+) True rnf141
TU190455 other upstream 207770 24583845 ~ 24588045 (+) False LOC122323037
TU190171 other upstream 338255 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 1058969 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 1216013 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 2357136 22434806 ~ 22438679 (+) True G128367
XR_006246977.1 other downstream 194668 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 493640 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 493640 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 545302 25346405 ~ 25348594 (+) True mt2
unassigned_transcript_2193 other downstream 1096320 25897423 ~ 25897505 (+) True trnal-cag_32

Expression Profile