RNA id: XM_043216717.1


Basic Information

Item Value
RNA id XM_043216717.1
length 5771
RNA type mRNA
GC content 0.47
exon number 27
gene id LOC122323072
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20506031 ~ 20531579 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggggaggggGTTGTGTCGGCTGTCACTGTTCTCTCGGTGCACGCGCGCTGGAAGTTTGAGCGTCTCGAGCGCTCCACGGAATTAACGGCAGCAGCACGAGCGCGTTAAGCTGCGCGGGGCCGCGAGCGGATTGTCCACCATATCACCGGGAACATAACCATGGCACTGAACAGGTCGCCCTCTGCCACGGAAAATTGGAACGGGGCCCCCGAGCGCATGCGTGTTTCCGCCGGGAAGAGTGAGTCCTCCTCAATGCAGAGCGAGAAACTCCGCTGTCTTGCCCGAGATATCTCTGAACTGGGCCATCAGGGCACGGCCAGCAGCGGGCATGATGCCAACGACATTGCTGAGGACACGgaagAGCCGGGCCCTGGTCCAGGAGGAGGGCTGTGTTTTGCAGACGGCCGCAGAAGAGTGGACTACGTTCTTGTTTATCACTGCAAGAGACGTCAGTCCCAACACCGGCACTCTGTTGTCTCTAACGGTAACGTGCCGTCTCAAAGCCCCACCCCTTCCCGCAGGAGTACGAAGGGCGATATTTCGGAGGCGGTGCTGGAGGCGGGGCTTGCAACAGAACCCGCCAATGAACTACAAGATAAAATTAGGGAGGAATTTGAAAGAGGACTTCAGGAGGAAGGCCTGGAGATTGAGCACGACAAagagATGAGAACGGTCCGGTTCACCCGTCTCCATGTTCCCTGGTCTGTTCTCAGTCGCGAGGCAGAACTCCTTAAGATCAGAGTGCCGACGAAAAAGacGTATCAGCTGAAAGAGAAGACGGGGCTCATGGGTGTAATAAGCTCGTTTTGGACGAAGATCAATCAGCCGTTCCAGCCGGGCGTCCCGGAGCCCCAAGACCCACGCAAGCGTGTGCTGTCCCAGCCGTTCAGCAGAGACAAGCTACACCTaTTTGATATACAGTCGAAAAACAGCTTGTTCAGCAATGCAACACGAGGTCGAATTGTTTATGAAATTCTGAGGCGCACAGCCTGCACACAGACCTGTCAAACTATGGGTATTTCATCACTGCTAGCTAAAGGGGTTTATGATTCTGCCTTCCCTCTGCATGATGGAGACTTTGACAGCTCGGAAGATAAAGAGCAACGCAACGACAGACAGATGCTGCATGAGGAATGGGCCAATTATGGAGCTTGCTTCAAATTTCAGCCAATGGACCTTATAAGGAAGTACTTTGGAGAGAAGATTGGCCTGTATTTTGCCTGGTTGGGAGTGTACACACAGCTGCTGATTCCAGCCTCTGCTTTAGGAGTCGCAGTATTCCTGTACGGCTGCCTCACCGTAGACACCAATGTGCCCAGTCAAGAGATGTGTGATGAGCGTCTTAATTTCACCATGTGTCCTCTGTGTGATCGTGTGTGTGATTACTGGCAGCTGAGCAGTATCTGCAGTACGGCGCGTGCCAGCTATCTGTTTGATAACCACGCTACCGTGGGCTTCGCTATCTTTATGTCCCTCTGGGCGGCCGTGTTTCTAGAGCACTGGAAGAGGAGGCAGCGATGTTTACAGCACAGCTGGGATCTGACAGGCATGGAAGACGATGAGGAAAGGGCTGAGAATGAGCTACGACCAGCATATGAGGATTTTCTCCTTAAGAAACAAGAGAAGAAGGCAAAGAATAAGAAGAAGGAAGAGCCGGACGCAGGAACGGATGACAAAGGAAGAGAGAAGCTACTGTCTGCTAAAGGAGGGCAGTCGCCGCTTGCCTCTGAGTCTTTGTCATGGACAGACCGGCTGCCAGGATACTGCATGAACATATCCTCTATCCTCCTTATGGTTGGGGTCACGTTCTCTGCCGTGTCTGGAGTGATTCTCTACCGCATCATTGTGTTTGCTGTAATGTCAATGAACCCTGATCATGAGGCCAAGGCTAATGTGCGTGTAACCGTGACAACCACCGCTGTCATCATCAACTTGCTGGTTGTTCTGGTGCTGGATGAGATCTACGGCGCTATAGCGGCCTGGATTACAGAGCTCGAGATTCCAAAGACTGAAGCGACATTCGAGGAGCATGTGATCTTGAAAGCTTTTTTGCTGAAGAGCATGAATGCATTTGCACCTGTCTTCTATGTGGCCTTCTTTAAGGGCAGGTTTGCTAGTCGTCCGGGTGACTATGTTTATGTCTTTAAGGATTTCCGCATGGAAGAgTGTTCTCCAGGTGGTTGTCTTATTGAAGTGTGTATTCAGCTGGGAATCATTATGCTGGGAAAGCAGCTCATTCAGAATAATGTGTTTGAAATTGCCATTCCAAAGCTGAAGAAGATGTATCGCACATATAAGGAAGAAAAAGATGGATCGGCAGATGAGGAGGATAAAGATTCTAAACGAGAACCACAGCGCTGGGATTTGGACTATGATCTGGAGCCATATGAAGGATTGAGCCCAGAGTACATGGAGATGGTTATTCAGTATGGATTTGTCACACTCTTTGTGGCCTCCTTCCCGCTGGCACCAGTCTTCGCTCTGCTTAATAACGTCATTGAAATACGACTAGATGCGGCAAAATTTGTCACTGAAATACGCAGACCTGATGCAGTCAGCGCTAAAGAAATTGGCATATGGTACAACATCTTGAGTGGAATCAGCAAGTTTGCTGTCATTACAAATGCATTTGTGATCTCCTTCACATCCGAGTTCATTCCTCGGATGGTGTATCAGTATTTGTACAGCGAGACAGGCACCATGCACGGTTATACCAACCACACGCTGGCTTATTTCAACACAAGCAACTTTAAACCTGGCACTGCACCGCATGACACCGACTTTGACAGGCAACTCCGTATTTGCAgGTACAAAGACTATCGAGATCCACCTTGGTCTCCAGAGTCTTACCAGCTTTCTAAGCAGTATTGGTCTGTGCTCGCTGCACGCTtggcttttgtcatttttttccagAATTTGGCCATGTTCCTCAGTATGCTGGTGGCATGGTTGATCCCAGATGTGCCTCGTTCTCTGAAGGAGCagttaaagagagagaaagcactCCTGATGGATCTGCTGCTCACTGAGGAGGCAGACAAGCAATGCAACCAGTCACACCCACTGACGGCTACAAACAATGATGTAGTCATCAAGGGTGTAGAGGAAGGATCATCAGAGGAGCTGCCTGTCTGCAGTAGGGTAATACTAAGCCAGTCAGATGAGGAGCTGAAAGAGTTACGGGTGACCAGTGGAGAGGAGGAAGAACTTGGGGAACAACCAGCAGAGGAGCCCATCGCATCCACCAGCGATTTGCCTGATAGGCGTCCACCTTCAACCTGTGAAAGCCTCAATACAACTTCAGAGTCTATGTCTAAGATAGCTTGTGATGATGAATCACCCACCACACCTTTAACATCTTCAAACCAGTCCATTCATTCAATTAAACCTGACACACTATCAGGGCACCGGGAGTTCGACTCGAACGGACCTCCACCTCGAGATCCAAGTTCCAGGGGTAAGAGTCGTTGCCGAACCCTTCCACCAAGGCACAGAGGACCTGAAGCTGAAGCGCATGTAACTAGACCTAGCCACTCGACGACATTCACACATCTCGACCAGAAAGTTCCCCCATCATCTAGTGAGCTCACCCGATTGGTCCCAAAAGGACCATCTAAAACCAAGCCCTCTGAAAGCCAAACATCTGTCTCGGATTCACTGGATTTAGAGCACACGAGCAGCCATTCCATAGCCCTCCCTCGTCCGCCATCCAGACCGGAGCTTGCTAGCAGCCTTTCGACAGTCTTGCCACGTCCTCCTTCAAAACCAGAGCTTGTGAGCAGCCAGTCAACAGGACTACCACGGCCTCCCTCCAAACCAGAGCTGATGGGAAGTGCATCAAAAGGGCTTCCGCCTCTTGATCCGGGCTCGAAAGTTAAGGGCCGATGCCAGACTCTTCCTCCGAAGTATAAAGGCGCAGAGACTTCTGGGGAGGCGAAAACCAGACCTAGTCACTCCACCACCTTTACGCACCTCAGTCAACAGATCCCCCCCTCACCCAGTGATCTCAAACGTAACACTCCCGTATGAGTGGGACAGGATGAAGTGGAGCAACGCTCCAACTTTTCAGCACCTTGCATCAGATCACCGTTCTCAGTGCCAGGCAAGCCATGCCATCAACAACTAATCTTTGACTTCTCATCGATGACTGAGCGAGCATTTTCAGTAACTCTGGATGTAGATCAATTGTTGATGGCTTGGTGGAGGTTCACTTGGTTGGTTAACTAGGGGGACTCTTTTGCACAGAATGACCAACTTCATTGAAGGACCGAGTGCAGACTTGTGCATTCTGGATATTCTTCTAGAGCCATTTGACATGGCTTAAACGTTGTCTTATACTGTGACTTGCCATTCTCTCTTTCACATATAAACTCCTGTACAGACATGCGCAGATATACACACACCAAATCTCATTAACCTGACCTCTTGAACCAGAACAggtgagaagagagagaggcttAGGAATATGGGCCAAAGGGCTTTGCAGTCCATGCCGATTTGTTACTCAGCAAGTGGAACTTTCATTTCGTGGTGTGTTCTTTCATGAGTTTTGCTAACATGTACTTAACCAGAATAATAACTAAATGTGAACTTATTAACACAACATGTCAGCTTCAGAATGAGCCAACTTGTTTGTGGAattgtctttttgtctttgGTGGCAACATCTGTAGTGTCTCATCCATATGGCAAGTTAGCACGTAGCTTGGCAGCACGCTCATGATATGATTAAGAAATGTGATGTTGAAATGGATTCAAAGCCAATTACGTTGTACATTGCGAATACACTGTAGTATTTTACATAATCCCATTTAGCACTATGCTAGCACAGCTAAAGCTAAAGTAAAGCATGCTATATTCACTGTGAAGAGGTTTTCAGGGATTTAGACccatttgtcactttttttaaagttgtttctcaatAACGGGGGACAAAAAGTATGAATGCATACAGGCCACGTTCACACTGCAAAGTTTTTGAAGcgacaaatgcatttatttgcgaGAATGAACAAGAAAGTTATCGCTCAATATGTGAACAGAATACAAGTGTCAATCCTACCACTCCGAACAAGCAATAGTTAAATGTCTCACAGCTGTGAAAATACATGCCAACAGTTCAGCCTGTTTggtgttttctatttttcaaactaatattagcgtaTTGAGATGTATTAGCATTTGGCAATTTTTAATGCGTCATTAGTTGTCACTAATAAACAAACTGTGTGTGTACAGAACAGGATTAAGGGATTAGtacacccaaaatgaaaattatgtcatcatttactcaccctgatgtCGTTCCAGCCAAtatcagtttgtttatttcatccctggaacacaaaataaaaaaagtatgttgaGTTTGTCTGTTCGCAAACTCTACAACagacaaaaaaacccataaaaataCCCCAGACGTCTCTCTATGCTATATTCTGAAGCCATACAACAGCTTGTGAGGCAAACTCTTaatttttgtggtgaactatTAAAACAACTGGAGCTGACAGCTGTATTTAGCTGCAGTGTGGGCATGGCCTCTGTGTATTCAGGTTTATGTGGCATGGCAGGTGTGCATGATATGCATTGTGCTAACAGGGATCAATTAGCTAAGAACAGTTACAAACAGCAGTCAAGTAGAACATTTACGTCCATGTTATTTCTAGAGGTCTTGAGAAACTCTcacaatattttgatattataacGAAAAAACATGATTACTGTTCATAATAAAAAGTGGAAAGGAAGAAGTTTGtctaatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188708 lncRNA upstream 122273 20325330 ~ 20383758 (+) True G127785
TU188734 lncRNA upstream 130196 20373854 ~ 20375835 (+) True G127800
TU188698 lncRNA upstream 224736 20256712 ~ 20281295 (+) True G127780
XR_006253191.1 lncRNA upstream 281447 20221304 ~ 20224584 (+) True LOC122363139
TU188681 lncRNA upstream 290800 20202748 ~ 20215231 (+) False G127766
TU188810 lncRNA downstream 30504 20562083 ~ 20572310 (+) True G127860
TU188825 lncRNA downstream 54472 20586051 ~ 20588863 (+) True G127873
TU188827 lncRNA downstream 65628 20597207 ~ 20600519 (+) False terb1
TU188764 lncRNA downstream 108437 20640016 ~ 20641059 (+) False LOC122362661
XR_006253183.1 lncRNA downstream 110186 20641765 ~ 20647639 (+) True LOC122363025
XM_043264827.1 mRNA upstream 1657 20471101 ~ 20504374 (+) False vwf
XM_043264825.1 mRNA upstream 1657 20471102 ~ 20504374 (+) True vwf
XM_043264826.1 mRNA upstream 1657 20471154 ~ 20504374 (+) False vwf
XM_043264111.1 mRNA upstream 60664 20440144 ~ 20445367 (+) True si:dkey-88e18.2
XM_043264958.1 mRNA upstream 83702 20414016 ~ 20422329 (+) True LOC122363067
XM_043264099.1 mRNA downstream 1327 20532906 ~ 20538618 (+) True cers3b
XM_043263997.1 mRNA downstream 14413 20545992 ~ 20549357 (+) True glipr1b
XM_043216579.1 mRNA downstream 19569 20551148 ~ 20556627 (+) False si:dkey-30c15.17
XM_043216582.1 mRNA downstream 19579 20551158 ~ 20556627 (+) False si:dkey-30c15.17
XM_043216580.1 mRNA downstream 19594 20551173 ~ 20556627 (+) True si:dkey-30c15.17
TU188630 other upstream 418450 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 492245 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1664496 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1723872 18777768 ~ 18782159 (+) True G127500
TU188208 other upstream 1944421 18560366 ~ 18561610 (+) False G127456
TU188799 other downstream 16248 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 19569 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 1869395 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 1903227 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 2925521 23457100 ~ 23579802 (+) False cdh13

Expression Profile