RNA id: XM_043216729.1


Basic Information

Item Value
RNA id XM_043216729.1
length 2381
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC122323077
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18654618 ~ 18658740 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTACCGATGGTGTAATTTTCCACAAATAATGGAAGACGGTGGCATGAGACGCGTTTTCTGGAAACCTGTTTACCTTCAGCGAAAGAGTTCTCCCAGGATATCGAGTGATTGATTGCCGTCGACTGATGCATTGGCCAATGAGAGCGGGCTTGAGGCGTGTTCACACGAGTAGACCCGCCTACAATGAAGAAACCCAGCATGAACAGGCAGAAGAAGAGCAGGACTGTGCAAGTATGAAGAGCGTGAGGGGACATTCCTGAAAATAATCTGCCGAAAACACATGTGAACAGATCTGGATCAGAATGGCAACGTTTAACAACACCGGAGTAACTAACGATAGTCACATCTACcgttgcattttaaaagagcaGTTCAAGTACATTCTCCTCCCGGTGAGCTACACTCTGGTGTTTGTGTTCGGCCTGGCGTTGAACATCACGGCCATGTATTTCATCCTGTTCCGAACCAAACACTGGAAGCCCAGCACCATCTACATGCTCAACCTCAACATCTGCGACACGCTTTACGTCCTCACCCTGCCGTTCCTCATCTACTATTACGCCGATAAGAACGACTGGCCGTTCGGGGAGCTGATGTGTAAGCTGATTCGCTTTCTCTTCTACACAAACCTCTACGGGAGCATCCTCTTCCTCAGCTGCATCAGTCTGCACCGCTTTTTAGGCATCTGCCACCCGATGCGTTCTCTGTACTGGATGAACGGCCGCCGCGCTCGTTTGGTTTCCGTAGGAGTATGGATGATCATTCTCATCTTACAAGCACCGATTCTTTATTTCTGCAGGGTTAGACTTAACAATAATGACCTGGTCTGTCACGACACCACTATCCAGGAGCTCTACAATGACTTTCTGGTGTACAGCTCGGTGGTGATGTTCCTGCTCTTTGTCGTACCGTTCGGGGTGGTGCTCGTTTGCAATGGACTTATGGTGAAGAAACTTCTCGACCCCGGCGTTCTCAGAGAGCCAATGTCGCAGCGCTCCAAACAGAAGTCGGTGAAGATGATCATCATCGTGCTTCTGGCTTTCATGTTGTGCTTCTTGCCTTTCCACGTGAACCGCAGTATATACTACACCTTCCGTTACCTGGACACACACGACTGCGATGTGCTGCGCCTCTCCAACAACATCTACAAGGTCACGCGACCTCTGGTCGGCCTCAACAGCTGCATCGACCCCATCCTCTACTTCATGGCAGGACAGAGCTTCAGAAACAGCATCAAGAAGAAATTAAGCATAAAGTCTGACAAATCCCTCTcaacattacagtaaaaatttggGTTATATTACGTGTCCTGACAGGGAAAtatctggttttgtttttattcttgctGAAACGAATGTAACCTGGACAAAAAAGTAGCTAACCCACTAGTTTGACCAATAGCGCGCAGATATAATGCATAACCGACCAATCATGGCATCCGAGAAGGTGGGATCTAAGCATTGAAAATGCAGGTAGACCTACATATAATGTATGAAGCCAAAACCCAAACATTTCAGGAAGATTAGAAATCCCAGGGAAAATAGGGCTTTTCACACTGCACTTAACTTTTTGCACTAATTTAGAAGCGAGATTAGTACCGTTTTTGCCTGGTGAGCTCTACATCCAGTCTCTTGCCTCATCTGTGAGAACAGACCGCCATTTCGAGTTAGTTCTGGTATGAAATATTCTCGTTTTGAGGTTGTGACTGACTCATCGTCTCAGTTCAAGCATGAAATGACtgtcttttcatatttaatgcaaaaaataaacttgaatgaACATCACAACGAATTTGATCTCAACCACATCAATATaccaaaatgttttaagaatCCACCGACGCTGAAAAAATTGGtcatgattggtcagatcgcctgtcaatcaaactcttTGGGAACAATGGGCTGGTTTTGTTTGGCAGGTCTGGCAACCCTGTTTTCTCTGAATTATACTCTAATTTGCACATTCTCAAAGTCTAATGTGATTGCGGCATAATTAATATAAGTGTGAAAAGCCGTACTCTTCATGGTACTGGAAGAATTTCCCGGTAATCATCAGGTTATTGCCCATAATCCGTCGAAAAGCATTTTAGATCAGAATAATGTGTTAGTAGCCTATACTGCAAAATGCTATAAGCGTATACTCCTTTTTTAGGTTAATACATTTAGCCATTGCTAATGctgaaaaagcacattttaaatccCCTGTTCAAAGaattttggggtcagtaagttattttttgtaacatttaacaCTTAAGCAAGCATTtgattaatcaaaagtgactgtaataacattttgaacACTAAATGTAGTGTTTGAAAaggtattttaaacaaatgctgttaTGAACTTTCTATTAAAGAACCCTGAAAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188242 lncRNA upstream 7783 18646556 ~ 18646836 (+) False LOC122323076
TU188216 lncRNA upstream 80265 18573819 ~ 18574354 (+) True G127460
TU188209 lncRNA upstream 91467 18559963 ~ 18563152 (+) True G127456
TU188186 lncRNA upstream 126277 18527129 ~ 18528342 (+) False G127443
TU188185 lncRNA upstream 126487 18527129 ~ 18528132 (+) True G127443
TU188255 lncRNA downstream 31825 18690565 ~ 18693231 (+) True G127492
TU188269 lncRNA downstream 71950 18730690 ~ 18781704 (+) False G127500
TU188406 lncRNA downstream 610923 19269663 ~ 19288546 (+) False LOC122323181
XR_006253152.1 lncRNA downstream 671582 19330322 ~ 19348479 (+) True LOC122362700
XR_006246957.1 lncRNA downstream 793790 19452530 ~ 19480221 (+) True LOC122323165
XM_043216726.1 mRNA upstream 2455 18646362 ~ 18652164 (+) True LOC122323076
XM_043216727.1 mRNA upstream 2455 18648572 ~ 18652164 (+) False LOC122323076
XM_043264715.1 mRNA upstream 108312 18544363 ~ 18546307 (+) True aamdc
XM_043216920.1 mRNA upstream 131055 18519991 ~ 18523564 (+) True aqp11
XM_043264031.1 mRNA upstream 193810 18393603 ~ 18460809 (+) True hcn4
XM_043216868.1 mRNA downstream 610871 19269611 ~ 19288556 (+) True LOC122323181
XM_043216867.1 mRNA downstream 616610 19275350 ~ 19288556 (+) False LOC122323181
XM_043216913.1 mRNA downstream 721295 19380035 ~ 19388663 (+) False slitrk3a
XM_043216914.1 mRNA downstream 723809 19382549 ~ 19388663 (+) True slitrk3a
XM_043216915.1 mRNA downstream 724198 19382938 ~ 19388663 (+) False slitrk3a
TU188207 other upstream 93009 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 93009 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 514366 18138535 ~ 18140253 (+) True G127292
TU187918 other upstream 726454 17922928 ~ 17928165 (+) True G127258
TU188266 other downstream 119028 18777768 ~ 18841535 (+) False G127500
TU188268 other downstream 119028 18777768 ~ 18782159 (+) True G127500
XR_006246956.1 other downstream 1344264 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 1427955 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 1889087 20547827 ~ 20549318 (+) False glipr1b

Expression Profile