RNA id: XM_043216743.1


Basic Information

Item Value
RNA id XM_043216743.1
length 2563
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC122323090
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 26346012 ~ 26357471 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTAAACGCGTCCTGtccatcatcctcctcctcctcctcaccaccaccaccatcatcatcatcatcagtccAGAGAGACCCGCGCTTATTATTAAAGCTCAGGTTCGCTTCACTCATCATCAGCCGGACTTAATGAGTTTGTCAGTGATTAAAGAGCCTGTGTGCTGATGAACCGGGCTGGATCCTGCCTCTTCGCCGCTCTGCCCTTAAAATGGAGTTTGTGGAGAGGAAGCGGAGCAGGAAATCGCAGAGCTTTAAACTGGTGAATGATGCAGATTTTAGCCATGAAATGGATGATGTAGACCAGAATGACACTGAAGGAGATGCTCTGGATGCTTCTGAGACCGAAGTCTGGTTAGGTGATGAAGGGATGGAGATAAAGAAGCAGATAACAGGCATGATGCGCTTGCTGAGCGACAAGACGGGGCGAGTGTACCAGCGGGTGGGACGAGAGGGAGAGACCCTCAAACAGGAGCCTCAGGAGGAGTCTCTCAGCCTGCCTGCGCCTCAGAGCCTGGCCCCTGAACATCCCCAGTACAGCTGGAGCTCCGTCCTGATGACTCATGGGCAGTACGGCACCCGCTCCAAAACACAGAGGATGCTCAACCACTCGAAAGCTAATGACATGGCCTTGCCCCCTGCGCctgctgccatggcaacagagCCCAGCTGCTGCATGTGCAACTGCAAGAGCACCCTGCAGGCCATTCTGCTGGAGTTACGTACCATGAGGAAACTAATCCAAACTCAAAGAGGATCCCAGGACAAACAGGGCTCCCAGGTATCGCTCTCGTCCCGAACCTCCATCTCCAGGAGGAGGAGCCGGAAGAGGAGGCCGGGTCACAGGGTGACAGTTCTGACCACGGCCAGTAAAAGAACCACACCTCCGTCGCCACCTGCTGAGAGCGATGCTGTTCACGAGTGTAATCAATCAAGAGAGGACACGCCCCCAGCAGTGACATCATTTATCCCAGATCCCATTCCCAGTGCCAAGACTCCTCCCTCTCACTACAGCGTCACCAGAGGCCAAAGTACCACAGAGccGGAGGTGCAGTTGGCCGAGGATTATGACGTATTTATTCCTAAAGCACAGTTGGACTCTATCTTACTGAACTACACTCGCTCTGGCAGCCTGCTCTTCAGGAAACTGGTGTGTGCGTTCTTTGATGATACCACGCTGGCAAACTCACTGCCCAACGGCAAGAGGAAGAGAGGTCTGAACGACACCAGGAAAGGACTCGATCAAAACATAGTCGGAGCCATTAAAGTGTTCACAGAAAAGTATTGCACAGCCAATGGAATTGAGAAGCTTCCCGGTCCCAGAGACTGGGTCCAGATTCTGCAAGACCAGATTAAACTTGCCCGTCGACGCTTAAAAAGAGCAGAGACAGCCTCGGACAGCAGTGATATTCAGCACAAAACAGagaaatgTCAGCAAACTGTTGGTAAAGTGGAAACTGTGACGCAAAACGGTGCTGCTTACGAGAGAACAGAATGTCTAGTTGCTATGGACACTGCCTGAGAAGAGATTGTTTTCAACAAAATGCAACCTCCGACCCCCGCGAAGGAGtcgtttttaattgttttttccGTCTAGACTGTAGCACGTATGGAGAGACGGGGCTTTGAAATTCTCACGGTCAGCTGTGCAACACGCAGAAAGTTTCTTTGGAAGAAAGCGGCCGATCGGTTAGCGTTCCAGACAGCTATAGACACACTTTTATAACACAATTGCTCCCATTTGATCGTTTTAAAGTGGGTCGTCCCAGATGTCTAGTCGTCTTCTATGAATATTCGGAAGTGTTTGTAGTTTTTCAGCTTCATCCAAATGCTTCACCAggactgctgagaaaaaaaatgactgtgcCTTTAATTCACTCTGCCATGCCAAGCAACAAACTGATGTCATTTCACGAATTGTGCTGTTTATTGACACTTTCTGGTAAAATACGTGGCATTTTCTATATTATTAGTCATATTCGCTACACATAGTCTTACTAATGTGTTGTTGGTTATATAATCTGGCAGACTGGTTATGTAGACCTGTAACTGTTTGACTTCCTGTGTAAGAGGATTTAGTGTCTATTGAATGTGTAAAAATGAGTGAATATGAACATTGTCCTGCGTCTGTGTAACAAAGGGTTTTTACCTCACGGTTAAATGCTTGAATAACTATTCATGTTAATATCCGGGTTAAAAACAAGTTAAGCTGTTTGGACAGCGTCTGGGGCTTGATTCACGTCTCAGTTTGTAAAAGCAATGCTAAAAACGCACATACGGAAATGCACTTACATTGTACACCTGCCCCATGGACTTCCACTGTAAGTGCATACCTGTACACACAAACTGATGTTTGCTTTCGCGAAGTGAGATACGAGTCAAAGCGAATGCCGTTGATGCTGTTGATAGAGCTTAAtggaaatattcctttaagggcACAGATGTTGTGTCTGTGCCTCCTTTTTAATATACCtgttttaaaaaagatgaaCCTTATGTTTATTAGTGGAAAGTTGTTTGGTCTGAGACGTCAAATAAATATGGCTGTGTCTTACATGGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191158 lncRNA upstream 11184 26332226 ~ 26335988 (+) True G129455
TU191157 lncRNA upstream 20605 26276902 ~ 26326567 (+) False G129454
TU191154 lncRNA upstream 63122 26229094 ~ 26284050 (+) True G129454
TU191140 lncRNA upstream 133828 26212930 ~ 26213344 (+) True G129446
TU191110 lncRNA upstream 186753 26160025 ~ 26160419 (+) True G129427
TU191214 lncRNA downstream 22232 26379703 ~ 26380285 (+) True G129491
XR_006246935.1 lncRNA downstream 50318 26407789 ~ 26408862 (+) True LOC122323030
XM_043264250.1 mRNA upstream 43995 26300916 ~ 26303177 (+) True LOC122362692
XM_043264251.1 mRNA upstream 43995 26300916 ~ 26303177 (+) False LOC122362692
XM_043264163.1 mRNA upstream 150784 26191004 ~ 26196388 (+) True LOC122362626
XM_043264898.1 mRNA upstream 384591 25952330 ~ 25962581 (+) True slc24a1
XM_043264335.1 mRNA upstream 403224 25940729 ~ 25943948 (+) True hacd3
TU191156 other upstream 15162 26229094 ~ 26332010 (+) False G129454
TU191155 other upstream 15162 26330472 ~ 26332010 (+) False G129454
TU191172 other upstream 40366 26303887 ~ 26306806 (+) True G129468
TU191105 other upstream 173016 25921267 ~ 26174156 (+) True G129424

Expression Profile