RNA id: XM_043216760.1


Basic Information

Item Value
RNA id XM_043216760.1
length 2606
RNA type mRNA
GC content 0.42
exon number 9
gene id nr1h4
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24474237 ~ 24488921 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTATCTTTGCCACGGCtggtaatgaaataaaacaatgagtCAGAAACTATGAAAAAAGTGAAGCAAATTATCATTAGCAGACGTGAAACTGTCACCTTTAATTTTACAACCCCCGCATCAGCATGTTTTGTCCTAGACTACATATATAAATCTGTATCGATCCTACCTGTAATAAGACAGGGGATTGTGACTGTCAGGTTAATGAGCAACTATAGCAACCTTTGTTCACACTAGCACTTATGTATGAAGTATGAAGGTGTTGAAGAACAGTAATTCTCTGTGAAAAGAGACATATAGACACatgctgaagagctgaaggaaCAGTTGGATGGTTAGGTATCAGAACGGCTAACGATCATCTGCACCCTTACTGGGTCACACTGAAATGGCCATGGTTCAGGACAAGGCTTCAGATATTCTGGCAGAGCAGAACAGTCCTTTGCTACAGGACCAGGAGGTCATGCCCTTCACCAGCTATCCCGGCATGCAGTACACCTCGGTGGAGCCCTCCATGTCATCACCATCATACTACTCCAGCCAGCACTGCTACTCACAGTACAATGGAGAGGAGTGGTACTCTCCATCCACCATGTTTGAGATGAGGAAAGGACCGTTGGAGGGAGGCTTTGATAATGAGCTGGACGAGTCTTGCCCAGTTGTTCCAACCATCTGTAAAAGATCCAGACACGCAGCCCACTCTGGAAGGAACAAAGGAGAGGAACTGTGTGTGGTCTGTGGAGATAAAGCATCAGGGTATCACTACAATGCACTCACATGTGAAGGATGTAAAGGTTTCTTCAGAAGGAGTATTACAAAGAAtgctgtatataaatgtaagagTGGAGGAAACTGTGAGATGGACATGTACATGCGCAGAAAATGCCAAGAATGTCGACTCAGAAAGTGCAAAGAGATGGGCATGTTGGCAGAGTGCTTATTAACTGAAATCCAGTGCAAATCCAAAAGactgaggaaaaacacaaaGGCCTCATCTGACGAAAGTATAGGGGATGATGTTGGTGATAGTAGAGACGCTAAACAAATTGTATCTACCACTAAACAGTCCAAGGAGAATATAGAACTGAGCCAAGACCAACAGGCTTTAATAAGTTATATAGTTGATGCTCACAACAAACATCGCATCCCTCAGGATATGGCGAAAAAACTGCTACAAGAGCAATTCAACACAGAAGAAAACTTCCTTCTGCTGACCGAAATGGCAACTAGCCACGTTCAGGTGCTGGTTgagttcacaaaaaatatacCAGGCTTTCAATCTCTGGACCACGAAGATCAGATCGCTTTATTAAAAGGTTCCGCTGTAGAGGCAATGTTCCTGCGCTCAGCACAGGTTTTCTCCAAGAAACTGCCCAATGGACACACAGAGGTGCTAGAGGACAGGATCAGAAGGAGTGGCATATCTGAAGAATTTATCACACCCATGTTTAACTTCTATAAAAGCATTGGGGAGCTGCAGATGATGCAAGAGGAGCATGCTCTCCTTACTGCTATCACGATCCTCTCACCAGACAGACCATACGTAAAGGACCAGCAGGCGGTGGAGCGTCTGCAGGAGCCCATGTTGGAGGTGCTGAGGAAGGTCTGTAAACTACAGCACCCCCACGAGCCCCAGCACTTTGCTCGGCTTCTCGGCCGTCTGACTGAGCTTCGTACCCTCAACCACCACCACGCAGAAATGCTGGAGTCATGGCGTATGAGCGATCACAAGTTCACCCCCCTCCTCTGTGAGATCTGGGACGTTCAGTGACTTCAGAAGTGCTACAGACTTTTACTAAGCTGCCAAAGAGAGGAGTTTACACACTTTTTAGAGAAGTGGACTGTTAAactatgtaatgtaaatgtaatatattgacGAGGTTCACGTAAAAGAGGAAATAAGAAGATTTAAGACATTATCAGCTCTTTAAAAAAGGACTGATGTAcgcattttgatattttaatgccTTTGTAAATGTTTACCTGGCCTTTGCAACCTTGGCACATTGGATTGTTTAAAATCTGCTTTCCTTTATCTGAGGATTTTGtggctttttacattttatgtctgtttttgttttgtgtaattctaaatattttaatgttctaTTAATATTAAGGTTCTGACTGACCTGTGGTCactcttttcacttttttcgAGAATTATGTAACCATACTGTTCATCATCCGAACCGTTTttaagaaatttagcattacatcacttgttcacCTCAGCAGTGATTGATgttcaaaaacatcacaataatccacaaggaATGCATCCATCCACCAATCAACATCTTGTcaagtagaaaaaaagaaacgtatgtaagaaacaaatatacataatttgGACGTaattttaaaccattgcttccaGCTAACGTTAAAATACCttgatgtatttgtttcttacaaacatgcagcttttcacttcatgaGATGGACtgttgtgtggattacttgtagattattgtgatgtttttagcagctgtttagactctcattctgacggcacccattcaattCAGAGGATCTACTGGAaggcaagtgatgtaatgctcaATTTCTCTAttccaataaagaaacaaactcatctagatcttg

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0032052 bile acid binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08537 NR1H4, FXR; farnesoid X receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190172 lncRNA upstream 19658 24458719 ~ 24458934 (+) True G128859
TU190169 lncRNA upstream 33393 24444502 ~ 24445199 (+) True G128857
TU190168 lncRNA upstream 35433 24442373 ~ 24443159 (+) True G128856
TU190152 lncRNA upstream 38060 24436038 ~ 24440532 (+) True G128841
TU190167 lncRNA upstream 43212 24435074 ~ 24435380 (+) True G128855
TU190188 lncRNA downstream 35606 24524527 ~ 24525054 (+) True G128863
TU190464 lncRNA downstream 175530 24664451 ~ 24728979 (+) True G129038
XR_006253143.1 lncRNA downstream 178563 24667484 ~ 24669844 (+) True LOC122362653
XR_006253144.1 lncRNA downstream 246266 24735187 ~ 24737012 (+) True LOC122362654
TU190615 lncRNA downstream 350141 24839062 ~ 24856231 (+) True G129115
XM_043264074.1 mRNA upstream 5641 24460916 ~ 24472951 (+) True slc17a8
XM_043264268.1 mRNA upstream 128435 24338891 ~ 24350157 (+) True si:dkey-103i16.6
XM_043264269.1 mRNA upstream 128435 24342924 ~ 24350157 (+) False si:dkey-103i16.6
XM_043216488.1 mRNA upstream 163612 24308176 ~ 24314980 (+) True si:ch73-62b13.1
XM_043264094.1 mRNA upstream 187133 24287138 ~ 24291459 (+) True zgc:153031
XM_043216514.1 mRNA downstream 5012 24493933 ~ 24502864 (+) True LOC122322915
XM_043216515.1 mRNA downstream 23211 24512132 ~ 24522487 (+) True LOC122322916
XM_043264987.1 mRNA downstream 38290 24527211 ~ 24534508 (+) False ube2na
XM_043264986.1 mRNA downstream 38291 24527212 ~ 24534508 (+) True ube2na
XM_043264775.1 mRNA downstream 46375 24535296 ~ 24549380 (+) False nudt4a
TU190171 other upstream 21032 24449765 ~ 24457560 (+) True G128858
TU189952 other upstream 741746 23724636 ~ 23736846 (+) False cdh13
TU189951 other upstream 898790 23457100 ~ 23579802 (+) False cdh13
TU189495 other upstream 2039913 22434806 ~ 22438679 (+) True G128367
TU189467 other upstream 2071610 22400974 ~ 22406982 (+) True LOC122363143
TU190455 other downstream 94924 24583845 ~ 24588045 (+) False LOC122323037
XR_006246977.1 other downstream 506850 24995771 ~ 24995950 (+) True LOC122323238
XR_006253170.1 other downstream 805822 25294743 ~ 25308065 (+) False kiaa0513
XR_006253171.1 other downstream 805822 25294743 ~ 25308065 (+) False kiaa0513
TU190830 other downstream 857484 25346405 ~ 25348594 (+) True mt2

Expression Profile